CX295309

Overview
NameCX295309
Unique NameCX295309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEPU (Dihydrolipoyl dehydrogenase OS=Pseudomonas putida GN=lpdV PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.862e-21
Identity = 61/159 (38.36%), Postives = 93/159 (58.49%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH--SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+A QLG+ T  +E + ALGGTCLN+GCIPSKAL+H +  +H+A      +  G+  +S  +D+   +A KD  V  LT G+  L KK+ V  V G+ K +   +V VD        ++ +++++ATGS    LP + +    ++SST ALA   +P
Sbjct:   21 AAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVD-----GQRIQCEHLLLATGSSSVELPMLPLGGP-VISSTEALAPKALP 172          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH3_HALMA (Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marismortui GN=lpdA3 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.738e-21
Identity = 70/159 (44.03%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS-VDTIEG-GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQL L  T +EK G  GG CLN GCIPSKAL+H S +  EA  +    G+ ++   V L  M+  KD  V  LT GIE L     V  +KG  +F   ++V  +   EG G+  +K +N IIATGS    +PG   +++RIVSS GAL  + VP
Sbjct:   24 AAIRAAQLALDVTLVEK-GEYGGACLNRGCIPSKALIHGSKLASEAGQA-EELGI-YADPTVALDEMINWKDGVVDQLTSGIEQLCTAAGVNLLKGTAEFADENKVRIIHQGEGQGSESLKFENCIIATGSRPIEIPGFGFEDERIVSSDGALNFDTVP 179          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_HALSA (Dihydrolipoyl dehydrogenase OS=Halobacterium salinarium GN=lpdA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.882e-21
Identity = 63/161 (39.13%), Postives = 95/161 (59.01%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEG----GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+A QLGL  T +EK  A GGTCLN GCIPSKA++ +S + HEA H+    GV ++  +VD+  M+  KD  V  LT G+E L K N V  ++G  +F    ++ V  + G    G+  ++ ++ I++TGS    +PG    +  ++ S  ALA+ E+P
Sbjct:   24 AAIRAGQLGLDVTLVEK-DAYGGTCLNYGCIPSKAMITASGVAHEAGHA-EEMGV-YADPDVDVAEMVDWKDGVVDQLTGGVEKLCKANGVNLIEGRAEFAGSDKLRV--VHGGDGQGSETIEYEHAIVSTGSRPIEVPGFDFGDDPVLDSRQALAMAELP 179          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=lpdA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.377e-21
Identity = 60/157 (38.22%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA + A LGL+T  IE +  LGG CLNVGCIPSK+LLH + +  +A    +  GV F+   +D+  +   K+K +  LT G+  + +K KV  V+G   F +   V V   +   T+   K+ IIATGS    +P +  ++ RI +ST AL+L  +P
Sbjct:   21 AAFRCADLGLETVLIEHQERLGGVCLNVGCIPSKSLLHIAKIIKDA-SELSESGVFFNKPIIDIKKINNWKEKIIKKLTTGLSNMGEKRKVRIVQGKALFNTDHSVLVKNKKNDFTIF-FKHAIIATGSKPIKIPSLPNEDNRIWNSTDALSLKSIP 175          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_CHLTE (Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum GN=lpd PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.421e-20
Identity = 60/157 (38.22%), Postives = 88/157 (56.05%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI AA+ GLKT CI ++  LGG C+N GCIP+KALL S+ ++  A +   + GV   +V  DL   + +        ++G+  L KK  V  + G       + V V   +G   ++  KNII+ATGS  + +PG+  D K+I++S  AL L EVP
Sbjct:   25 AAIHAARYGLKT-CIVEKAVLGGVCVNWGCIPTKALLRSAEVFDLAKNP-ETFGVNVGNVSFDLAQAVKRSRNVALKSSKGVAYLLKKAAVEVLAGEAVLTGGAGVMVTMPDGSVRMLGAKNIIVATGSTPRVIPGLEPDGKKIITSREALILKEVP 179          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_CHLP8 (Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvum (strain NCIB 8327) GN=lpd PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.855e-20
Identity = 56/157 (35.67%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA+ AA+ G+K  C+ ++ +LGG C+N GCIP+KALL S+ +Y  A +  +  GV  S +  DL   + +  K     ++G+E + KK KV   +G         V V   +G    ++  NII+ATG+  + +PG+  D K+I++S  AL L +VP
Sbjct:   25 AALHAARHGMKV-CLVEKASLGGVCVNWGCIPTKALLRSAEVYDLAKNP-SEFGVNVSELSFDLAQAVKRSRKVSLKSSKGVEFMLKKAKVEVWRGEAVLTGSKGVKVTAEDGSERSLEAANIIVATGAQPRVIPGLEPDGKKIITSREALILKDVP 179          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_THESC (Dihydrolipoyl dehydrogenase OS=Thermus scotoductus GN=lpd PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.165e-20
Identity = 64/155 (41.29%), Postives = 88/155 (56.77%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 666
            AAI+ AQLGLK   +E    +GG CLNVGCIP+KALLH++   H  +      G+K +  E+DL  + A +D  V  LT G+ GL K NKV  ++G+ +F  P E+ V+    G T    ++ IIATGS+   L G    E  +  ST AL + E
Sbjct:   18 AAIRGAQLGLKVLAVEA-AEVGGVCLNVGCIPTKALLHAAETVHH-LKGAEGFGLK-AKPELDLKKLGAWRDGVVKKLTGGVAGLLKGNKVELLRGFARFKGPREIEVN----GET-YGAQSFIIATGSEPMPLKGFPFGED-VWDSTRALRVEE 163          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_MYCTU (Dihydrolipoyl dehydrogenase OS=Mycobacterium tuberculosis GN=lpd PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.165e-20
Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLGL T  +E +   GG CLNVGCIPSKALL ++ + H       + G+    V  D      +  K       G+  L KKNK+T + GYG F   + + VD  +GG   V   N IIATGS  + +PG ++    +V+    +   E+P
Sbjct:   18 AAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSL-SANVVTYEEQILSRELP 171          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_MYCBO (Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis GN=lpd PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.165e-20
Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLGL T  +E +   GG CLNVGCIPSKALL ++ + H       + G+    V  D      +  K       G+  L KKNK+T + GYG F   + + VD  +GG   V   N IIATGS  + +PG ++    +V+    +   E+P
Sbjct:   18 AAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSL-SANVVTYEEQILSRELP 171          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_BUCBP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=lpdA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.208e-20
Identity = 55/157 (35.03%), Postives = 88/157 (56.05%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA + + LGL    IE+  +LGG CLNVGCIPSK LLH + +  + +   +  G+ F  ++++L  +   + K + + + GI  L +K  V  + GY KF+  + + V   E  + VV    I+IATGS  K L  I  D+ RI +S+ A+++  +P
Sbjct:   22 AAFRCSDLGLNVVLIEQYYSLGGVCLNVGCIPSKYLLHIAKVIKD-VKKLSRIGISFEKLDINLKEIQCNQKKIIESFSSGISNLARKRNVRIIFGYAKFLDANSIFVQG-EHDSYVVSFNKIVIATGSLSKKLSYIPYDDIRIWNSSFAVSIPSIP 176          
The following BLAST results are available for this feature:
BLAST of CX295309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
DLDH1_PSEPU2.862e-2138.36Dihydrolipoyl dehydrogenase OS=Pseudomonas putida ... [more]
DLDH3_HALMA3.738e-2144.03Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marism... [more]
DLDH_HALSA4.882e-2139.13Dihydrolipoyl dehydrogenase OS=Halobacterium salin... [more]
DLDH_BUCAP6.377e-2138.22Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH_CHLTE1.421e-2038.22Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum ... [more]
DLDH_CHLP81.855e-2035.67Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvu... [more]
DLDH_THESC3.165e-2041.29Dihydrolipoyl dehydrogenase OS=Thermus scotoductus... [more]
DLDH_MYCTU3.165e-2037.58Dihydrolipoyl dehydrogenase OS=Mycobacterium tuber... [more]
DLDH_MYCBO3.165e-2037.58Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis... [more]
DLDH_BUCBP9.208e-2035.03Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]

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Properties
Property NameValue
Genbank descriptionC05070H03SK PhIFruit1 Citrus clementina cDNA clone C05070H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295309 ID=CX295309; Name=CX295309; organism=Citrus clementina; type=EST; length=672bp
CGATTGATTGGAGAAAAAGTTGATTGAAAAATGGCGATGGCAAGTCTTGC
AAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGAATG
GTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCGGCA
TCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTACGT
GGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCGAGA
AGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCCTCT
AAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTCTTT
TGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTGCTA
TGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATTGAA
GGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCAAGTT
TATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACACTG
TCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAGTCT
CTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGGAGC
TTTAGCATTGAATGAAGTTCCT
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