CX295309

Overview
NameCX295309
Unique NameCX295309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_HALVO (Dihydrolipoyl dehydrogenase OS=Halobacterium volcanii GN=lpdA PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.051e-19
Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV-DTIEG-GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQ G+ TT +EK  A GGTCLN GCIPSKAL+  +++ HEA ++    G+    V VD+  +   K   V  LT G+E L K N V  V+G  +F   + V +    EG G+  ++ ++ IIATGS V  +PG    ++ + SS  AL  + VP
Sbjct:   24 AAIRAAQNGIDTTLVEK-DAYGGTCLNYGCIPSKALITGANLAHEAGNA-EEMGIHADPV-VDMSQLRDWKSGVVDQLTGGVEKLCKANGVNLVEGTARFKDENAVRIAHGGEGQGSETIEFEHCIIATGSRVIQIPGFDFGDEPVWSSRDALEADTVP 179          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_MYCLE (Dihydrolipoyl dehydrogenase OS=Mycobacterium leprae GN=lpd PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.795e-19
Identity = 58/160 (36.25%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTV---VKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLGL T  +E +   GG CLNVGCIPSK LLH++ + H       + G+       D      +  K       G+  L KKNK+T + GYG+F   + +SV+  EG       V   N+IIATGS  + +PG T+    +++    +   E+P
Sbjct:   18 AAIRAAQLGLSTAVVEPK-YWGGICLNVGCIPSKVLLHNAELAHIFTKEAKTFGIS-GDASFDYGIAYDRSRKVSEGRVAGVHFLMKKNKITEIHGYGRFTDANTLSVELSEGVPETPLKVTFNNVIIATGSKTRLVPG-TLLSTNVITYEEQILTRELP 174          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: IRC15_YEAST (Increased recombination centers protein 15 OS=Saccharomyces cerevisiae GN=IRC15 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH--EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA++A+Q GL T C+++R +LGG  L  G +PSK LL+ S++Y   +        G +    + D+ A  +     +  L    +    KN VT  KG   F  P  V +        +V+ K I++ATGS V   PG+ ID  +I+SS  AL+L+ +P
Sbjct:   32 AAMQASQAGLLTACVDQRASLGGAYLVDGAVPSKTLLYESYLYRLLQQQELIEQRGTRLFPAKFDMQAAQSALKHNIEELGNVYKRELSKNNVTVYKGTAAFKDPHHVEIAQRGMKPFIVEAKYIVVATGSAVIQCPGVAIDNDKIISSDKALSLDYIP 190          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_ACHLA (Dihydrolipoyl dehydrogenase (Fragment) OS=Acholeplasma laidlawii GN=pdhD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 62/162 (38.27%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGI--TIDEKRIVSSTGALALNEVP 672
            AAIKAAQ G K   +EK   +GG CLN GCIP+K  L S+ +++    S    GV  S  V  D   ++++KD  V  LT G+  L KKN V    G+G   S +EV V+        +K KN+IIATGS   V  +PG+    ++  +V+S   L +   P
Sbjct:   19 AAIKAAQYGAKVALVEKE-VVGGICLNHGCIPTKTFLKSAKVFNTVKKSM-DFGVSTSGEVGFDWSKIVSRKDGVVKQLTNGVAFLLKKNGVDVYNGFGDIKSANEVVVN-----GESLKTKNVIIATGSSAVVPPIPGVKEAYEKGIVVTSRELLNVKNYP 173          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: MERA_PSEAE (Mercuric reductase OS=Pseudomonas aeruginosa GN=merA PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.625e-16
Identity = 56/161 (34.78%), Postives = 86/161 (53.42%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVP 672
            AA+KA + G + T IE RG +GGTC+NVGC+PSK ++ ++H+ H    S    G+  +   +D   ++AQ+   V  L     EG+   N  +T V G  +F     ++V   EGG  VV     ++ATG+   V  +PG  + E    +ST ALA + +P
Sbjct:  113 AALKAVEQGAQVTLIE-RGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPG--LKESPYWTSTEALASDTIP 270          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_SYNY3 (Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=lpdA PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 4.729e-16
Identity = 57/161 (35.40%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA--MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGN--TVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA+ A + GLKT  IE +  +GGTC+N GCIPSKALL +S    E          G++ + V     A+ A  +  VS +   +     + KV  ++G+GK   P EV   T+ G N   ++K K I++  GS     PGI ID K + +S  A+ L  +P
Sbjct:   21 AALHAVKCGLKTAIIEAKD-MGGTCVNRGCIPSKALLAASGRVREMSDQDHLQQLGIQINGVTFTREAIAAHANDLVSKIQSDLTNSLTRLKVDTIRGWGKVSGPQEV---TVIGDNETRILKAKEIMLCPGSVPFVPPGIEIDHKTVFTSDEAVKLETLP 177          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: MERA_ALCSP (Mercuric reductase OS=Alcaligenes sp. GN=merA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVP 672
            AA+KA + G   T IE RG +GGTC+NVGC+PSK ++ ++H+ H    S    G+  +   +D   ++AQ+   V  L     EG+   N  +T + G  +F     ++V   +GG  VV     ++ATG+   V  +PG  + E    +ST AL  + +P
Sbjct:  111 AALKAVEQGANVTLIE-RGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPAIDRSKLLAQQQARVDELRHAKYEGILDDNPAITVLHGEARFKDDQSLAVRLNDGGERVVAFDRCLVATGASPAVPPIPG--LKESPYWTSTEALVSDTIP 268          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: MERA_SHIFL (Mercuric reductase OS=Shigella flexneri GN=merA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 53/161 (32.92%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVP 672
            AA+KA + G + T IE RG +GGTC+NVGC+PSK ++ ++H+ H    S    G+  ++  +   A++AQ+   V  L     EG+ + N  +T + G  +F     + V   +GG  VV     +IATG+   V  +PG  + +    +ST AL    +P
Sbjct:  112 AALKAVEQGARVTLIE-RGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATTPTIQRTALLAQQQARVDELRHAKYEGILEGNPAITVLHGSARFKDNRNLIVQLNDGGERVVAFDRCLIATGASPAVPPIPG--LKDTPYWTSTEALVSETIP 269          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: STHA_MYCTU (Probable soluble pyridine nucleotide transhydrogenase OS=Mycobacterium tuberculosis GN=sthA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15
Identity = 51/159 (32.08%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA-MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV-DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI +A+LG     +E+   LGG C+N G IPSK  L  + +Y   M+    +G  +   +   PA ++A+    +      +     +N+V  + G+G+FI P  + V D      T V G  IIIATG+      G+  DE+R++ S G L L  +P
Sbjct:   18 AAIASAKLGKSVAIVERGRMLGGVCVNTGTIPSKT-LREAVLYLTGMNQRELYGASYRVKDRITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLP 175          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: STHA_MYCTA (Soluble pyridine nucleotide transhydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=sthA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15
Identity = 51/159 (32.08%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA-MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV-DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI +A+LG     +E+   LGG C+N G IPSK  L  + +Y   M+    +G  +   +   PA ++A+    +      +     +N+V  + G+G+FI P  + V D      T V G  IIIATG+      G+  DE+R++ S G L L  +P
Sbjct:   18 AAIASAKLGKSVAIVERGRMLGGVCVNTGTIPSKT-LREAVLYLTGMNQRELYGASYRVKDRITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLP 175          
The following BLAST results are available for this feature:
BLAST of CX295309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
DLDH_HALVO2.051e-1940.88Dihydrolipoyl dehydrogenase OS=Halobacterium volca... [more]
DLDH_MYCLE7.795e-1936.25Dihydrolipoyl dehydrogenase OS=Mycobacterium lepra... [more]
IRC15_YEAST1.330e-1833.33Increased recombination centers protein 15 OS=Sacc... [more]
DLDH_ACHLA1.244e-1638.27Dihydrolipoyl dehydrogenase (Fragment) OS=Acholepl... [more]
MERA_PSEAE1.625e-1634.78Mercuric reductase OS=Pseudomonas aeruginosa GN=me... [more]
DLDH_SYNY34.729e-1635.40Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (... [more]
MERA_ALCSP1.797e-1532.92Mercuric reductase OS=Alcaligenes sp. GN=merA PE=3... [more]
MERA_SHIFL3.065e-1532.92Mercuric reductase OS=Shigella flexneri GN=merA PE... [more]
STHA_MYCTU4.003e-1532.08Probable soluble pyridine nucleotide transhydrogen... [more]
STHA_MYCTA4.003e-1532.08Soluble pyridine nucleotide transhydrogenase OS=My... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05070H03SK PhIFruit1 Citrus clementina cDNA clone C05070H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295309 ID=CX295309; Name=CX295309; organism=Citrus clementina; type=EST; length=672bp
CGATTGATTGGAGAAAAAGTTGATTGAAAAATGGCGATGGCAAGTCTTGC
AAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGAATG
GTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCGGCA
TCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTACGT
GGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCGAGA
AGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCCTCT
AAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTCTTT
TGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTGCTA
TGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATTGAA
GGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCAAGTT
TATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACACTG
TCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAGTCT
CTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGGAGC
TTTAGCATTGAATGAAGTTCCT
back to top