CX295309

Overview
NameCX295309
Unique NameCX295309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: TRXR1_PONAB (Thioredoxin reductase 1, cytoplasmic OS=Pongo abelii GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 51/166 (30.72%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA +AAQ G K   ++         R  LGGTC+NVGCIP K L+H + +  +A+    ++G K   +V+ D   M+      + +L  G     ++ KV Y   YG+FI P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P
Sbjct:   27 AAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCP 190          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: TRXR1_HUMAN (Thioredoxin reductase 1, cytoplasmic OS=Homo sapiens GN=TXNRD1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 51/166 (30.72%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA +AAQ G K   ++         R  LGGTC+NVGCIP K L+H + +  +A+    ++G K   +V+ D   M+      + +L  G     ++ KV Y   YG+FI P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P
Sbjct:  177 AAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCP 340          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: MERA_THIFE (Mercuric reductase OS=Thiobacillus ferrooxidans GN=merA PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  205 AIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVP 672
            A+KA + G + T IE R  +GGTC+N+GC+PSK ++ ++H+ H    S    G++  +  +   A++ Q+   V  L     EG+   N  +T ++G  +F     V V   +GG  VV     ++ATG+   V  +PG  + +    +ST  L    +P
Sbjct:  100 ALKAVERGARVTLIE-RSTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDGGIQAVAPTIQRTALLVQQQARVDELRHAKYEGILDGNPAITVLRGEARFKDSRSVVVHLNDGGERVVMFDRCLVATGASPAVPPIPG--LKDTPYWTSTEGLVSESIP 256          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: GSHR_HAEIN (Glutathione reductase OS=Haemophilus influenzae GN=gor PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = 1
Query:  211 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA-SHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            +AA  G K   IE +  LGGTC+NVGC+P K + + +H+  EA++++A  +G      + D   ++  +   +S +      +  KN +  + G+GKF+    + V   +G    V   +I+IATG      P I   E  I  S G  AL E+P
Sbjct:   22 RAASYGKKCAIIEAKH-LGGTCVNVGCVPKKVMFYGAHI-AEAINNYAPDYGFDVEVKKFDFSKLIESRQAYISRIHTSYNNVLAKNNIDVINGFGKFVDAHTIEVTLADGTKEQVTADHILIATGGR-PYRPNIKGQEYGI-DSDGFFALTELP 172          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: TRXR1_RAT (Thioredoxin reductase 1, cytoplasmic OS=Rattus norvegicus GN=Txnrd1 PE=1 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 47/146 (32.19%), Postives = 72/146 (49.32%), Query Frame = 1
Query:  238 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            T +   G LGGTC+NVGCIP K L+H + +  +A+    ++G K   +V+ D   M       + +L  G     ++ KV Y   YGKFI P ++     +G   V   +  +IATG   + L GI  D++  +SS    +L   P
Sbjct:   47 TPLGTNGGLGGTCVNVGCIPKK-LMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCP 190          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: GSHR_NEUCR (Glutathione reductase OS=Neurospora crassa GN=glr-1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 45/138 (32.61%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGI 612
            A   A + G+K+  +E +  LGGTC+NVGC+P K   +++ +  E +H    +G     +   D P    ++D  V+ L    E     +KV YV G+ K +SP+ V V   +G  +VV  K I+IA G +    P I
Sbjct:   23 ARAAAGKYGIKSMVVEGK-RLGGTCVNVGCVPKKVTFYAA-LVAETIHQAKDYGFSVEQTAPFDWPTFKQKRDAYVARLNGIYERNLANDKVEYVHGWAKLLSPNSVEVTLDDGTKSVVNAKKILIAVGGNPTIPPHI 158          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: MERA_STAES (Mercuric reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=merA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 55/160 (34.38%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTR-GIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVP 672
            AAIKA + G K   +E RG +GGTC+N+GC+PSK +L +  +   A ++    G++ S+   DL  +  QKD  VS + +     L ++     ++G   FI    + V+   G N  +  K+ +IATG+   V  +PG  ++E   ++ST AL L EVP
Sbjct:  100 AAIKANENGAKVAMVE-RGTVGGTCVNIGCVPSKTMLRAGEINGLAQNN-PFTGLQTSTGAADLAQLTEQKDGLVSQMRQEKYIDLIEEYGFDLIRGEASFIDDKTIQVN---GQN--ITSKSFLIATGASPAVPEIPG--MNEVDYLTSTSALELKEVP 250          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: MERA_STAAU (Mercuric reductase OS=Staphylococcus aureus GN=merA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 55/160 (34.38%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTR-GIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVP 672
            AAIKA + G K   +E RG +GGTC+N+GC+PSK +L +  +   A ++    G++ S+   DL  +  QKD  VS + +     L ++     ++G   FI    + V+   G N  +  K+ +IATG+   V  +PG  ++E   ++ST AL L EVP
Sbjct:  100 AAIKANENGAKVAMVE-RGTVGGTCVNIGCVPSKTMLRAGEINGLAQNN-PFTGLQTSTGAADLAQLTEQKDGLVSQMRQEKYIDLIEEYGFDLIRGEASFIDDKTIQVN---GQN--ITSKSFLIATGASPAVPEIPG--MNEVDYLTSTSALELKEVP 250          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_MYCPN (Dihydrolipoyl dehydrogenase OS=Mycoplasma pneumoniae GN=pdhD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKR--IVSSTGALALNEVP 672
            AA  A +  LKT  +EK    GG CLNVGCIP+K LL  + +     H+   +G+  +  V ++   ++ QK K VS L  G++ +    K   V G  K + P     +T+E        K+I++ATGS  +  +LPG     +   ++ ST AL+L  VP
Sbjct:   17 AAEYAGKHKLKTLVVEKE-YFGGVCLNVGCIPTKTLLKRAKIVDYLRHA-QDYGISINGQVALNWNQLLEQKGKVVSKLVGGVKAIIASAKAETVMGEAKVLDP-----NTVEVAGKTYTTKSIVVATGSRPRYLTLPGFAEARQNGFVIDSTQALSLEGVP 171          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: TRXR1_MOUSE (Thioredoxin reductase 1, cytoplasmic OS=Mus musculus GN=Txnrd1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 45/146 (30.82%), Postives = 71/146 (48.63%), Query Frame = 1
Query:  238 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            T +  R  LGGTC+NVGCIP K L+H + +  +A+    ++G K   +V+ D   M       + +L  G     ++ KV Y   YG+FI P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P
Sbjct:  161 TPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALKDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVYENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCP 304          
The following BLAST results are available for this feature:
BLAST of CX295309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
TRXR1_PONAB2.197e-1330.72Thioredoxin reductase 1, cytoplasmic OS=Pongo abel... [more]
TRXR1_HUMAN2.197e-1330.72Thioredoxin reductase 1, cytoplasmic OS=Homo sapie... [more]
MERA_THIFE2.197e-1330.00Mercuric reductase OS=Thiobacillus ferrooxidans GN... [more]
GSHR_HAEIN2.197e-1330.97Glutathione reductase OS=Haemophilus influenzae GN... [more]
TRXR1_RAT2.869e-1332.19Thioredoxin reductase 1, cytoplasmic OS=Rattus nor... [more]
GSHR_NEUCR2.869e-1332.61Glutathione reductase OS=Neurospora crassa GN=glr-... [more]
MERA_STAES3.747e-1334.38Mercuric reductase OS=Staphylococcus epidermidis (... [more]
MERA_STAAU3.747e-1334.38Mercuric reductase OS=Staphylococcus aureus GN=mer... [more]
DLDH_MYCPN4.894e-1333.33Dihydrolipoyl dehydrogenase OS=Mycoplasma pneumoni... [more]
TRXR1_MOUSE4.143e-1230.82Thioredoxin reductase 1, cytoplasmic OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC05070H03SK PhIFruit1 Citrus clementina cDNA clone C05070H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295309 ID=CX295309; Name=CX295309; organism=Citrus clementina; type=EST; length=672bp
CGATTGATTGGAGAAAAAGTTGATTGAAAAATGGCGATGGCAAGTCTTGC
AAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGAATG
GTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCGGCA
TCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTACGT
GGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCGAGA
AGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCCTCT
AAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTCTTT
TGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTGCTA
TGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATTGAA
GGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCAAGTT
TATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACACTG
TCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAGTCT
CTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGGAGC
TTTAGCATTGAATGAAGTTCCT
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