CX295309

Overview
NameCX295309
Unique NameCX295309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: TRXR1_BOVIN (Thioredoxin reductase 1, cytoplasmic OS=Bos taurus GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 44/146 (30.14%), Postives = 71/146 (48.63%), Query Frame = 1
Query:  238 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            T +  R  LGGTC+NVGCIP K L+H + +  +A+    ++G     +V+ D   M       + +L  G     ++ KVTY   YG+F+ P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P
Sbjct:   47 TPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALRDSRNYGWNVEETVKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCP 190          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: GSHR_SCHPO (Glutathione reductase OS=Schizosaccharomyces pombe GN=pgr1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV-EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEG-GNTVVKGKNIIIATG 585
            +A +AA+ G K   IE  G LGGTC+N GC+P K + + + +  + M +   +G   S +   D   +  ++D  +  L    E    K+ V Y+ G+  F+SP+EV+VD  +G G  V   K I+IA G
Sbjct:   22 SARRAAKHGAKVALIEASGRLGGTCVNYGCVPKKIMWNIADLVAK-MKTAKQNGFPNSQLGSFDWGMIKRKRDAYIGRLNGIYERNVNKDGVAYISGHASFVSPTEVAVDMNDGSGTQVFSAKYILIAVG 150          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: TRXR1_PIG (Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 42/146 (28.77%), Postives = 70/146 (47.95%), Query Frame = 1
Query:  238 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            T +  R  LGGTC+NV CIP K L+H + +  +A+    ++G     +++ D   M       + +L  G     ++ KVTY   YG+F+ P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P
Sbjct:   47 TPLGTRWGLGGTCVNVSCIPKK-LMHQAALLGQALRDSRNYGWNVEETIKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGQFVGPHRIKATNNKGKEKIYSAEKFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCP 190          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: STHA_SERP5 (Soluble pyridine nucleotide transhydrogenase OS=Serratia proteamaculans (strain 568) GN=sthA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 42/157 (26.75%), Postives = 75/157 (47.77%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +   +  +  ++    P ++   D  ++  TR  +G +++N+     G  +FI  + VSV  ++G    ++  +I+IA GS   +   +  +  RI +S   L LN  P
Sbjct:   21 AAMGLVKQGARVAVIERYNNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYNNSR--TLSATFPDILRHADNVINQQTRMRQGFYERNQCKLFAGDARFIDANTVSVSYMDGTQDTIRADHIVIACGSRPYNPSSVDFNHPRIYNSDSILELNHEP 175          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: GSHR_ECOLI (Glutathione reductase OS=Escherichia coli (strain K12) GN=gor PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 1
Query:  211 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA-SHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVP 672
            +AA  G K   IE +  LGGTC+NVGC+P K + H++ +  EA+H +   +G   +  + +   ++A +   +  +    E +  KN V  +KG+ +F     V   T+E     +   +I+IATG       +PG+       + S G  AL  +P
Sbjct:   22 RAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQI-REAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARF-----VDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYG----IDSDGFFALPALP 167          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: STHA_MARMS (Soluble pyridine nucleotide transhydrogenase OS=Marinomonas sp. (strain MWYL1) GN=sthA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 44/160 (27.50%), Postives = 78/160 (48.75%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA+ AA+ G +   IE    +GG+C ++G IPSKAL H+     + + +F ++ +     E      P ++ + ++ +     G    + +N++    G GKF   + + V+T E G  +++ K ++IATGS       I     RI  S   L+L+  P
Sbjct:   20 AAMSAAKAGKRVAVIEASSQVGGSCTHLGTIPSKALRHAV----KEIIAFNTNPMFRDIGEPRWFSFPKVLDRANRVIDKQVMGRTEYYARNRIDIYFGRGKFKDANTIEVNTYEKGPELLEAKKVVIATGSRPYRPANIDFSHPRIYCSDTILSLSHTP 175          
The following BLAST results are available for this feature:
BLAST of CX295309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
TRXR1_BOVIN4.143e-1230.14Thioredoxin reductase 1, cytoplasmic OS=Bos taurus... [more]
GSHR_SCHPO4.143e-1233.85Glutathione reductase OS=Schizosaccharomyces pombe... [more]
TRXR1_PIG2.685e-1128.77Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa... [more]
STHA_SERP53.507e-1126.75Soluble pyridine nucleotide transhydrogenase OS=Se... [more]
GSHR_ECOLI4.580e-1128.66Glutathione reductase OS=Escherichia coli (strain ... [more]
STHA_MARMS7.813e-1127.50Soluble pyridine nucleotide transhydrogenase OS=Ma... [more]

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Properties
Property NameValue
Genbank descriptionC05070H03SK PhIFruit1 Citrus clementina cDNA clone C05070H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295309 ID=CX295309; Name=CX295309; organism=Citrus clementina; type=EST; length=672bp
CGATTGATTGGAGAAAAAGTTGATTGAAAAATGGCGATGGCAAGTCTTGC
AAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGAATG
GTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCGGCA
TCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTACGT
GGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCGAGA
AGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCCTCT
AAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTCTTT
TGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTGCTA
TGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATTGAA
GGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCAAGTT
TATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACACTG
TCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAGTCT
CTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGGAGC
TTTAGCATTGAATGAAGTTCCT
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