CX295311

Overview
NameCX295311
Unique NameCX295311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_PIPCE (ATP synthase subunit c, chloroplastic OS=Piper cenocladum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_PHYPA (ATP synthase subunit c, chloroplastic OS=Physcomitrella patens GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_PHAAO (ATP synthase subunit c, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_PELHO (ATP synthase subunit c, chloroplastic OS=Pelargonium hortorum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_PANGI (ATP synthase subunit c, chloroplastic OS=Panax ginseng GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_OENPA (ATP synthase subunit c, chloroplastic OS=Oenothera parviflora GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_OENGL (ATP synthase subunit c, chloroplastic OS=Oenothera glazioviana GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_OENEH (ATP synthase subunit c, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_OENBI (ATP synthase subunit c, chloroplastic OS=Oenothera biennis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_OENAR (ATP synthase subunit c, chloroplastic OS=Oenothera argillicola GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
The following BLAST results are available for this feature:
BLAST of CX295311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_PIPCE3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Piper cen... [more]
ATPH_PHYPA3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Physcomit... [more]
ATPH_PHAAO3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Phalaenop... [more]
ATPH_PELHO3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Pelargoni... [more]
ATPH_PANGI3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Panax gin... [more]
ATPH_OENPA3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Oenothera... [more]
ATPH_OENGL3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Oenothera... [more]
ATPH_OENEH3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Oenothera... [more]
ATPH_OENBI3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Oenothera... [more]
ATPH_OENAR3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Oenothera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05070H05SK PhIFruit1 Citrus clementina cDNA clone C05070H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295311 ID=CX295311; Name=CX295311; organism=Citrus clementina; type=EST; length=702bp
ATATCTAATCCACCCTACTCTTGTGATTATTGTGAATTTCGATAGGGATT
CTAATAGAAATTGTTCGATTTCGTCTTTGCTTTGATGCTTTGACTGGGAA
TTGAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATT
CAAAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATT
TACAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATC
TAAAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGA
GTTCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTC
ATAATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTA
TTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGT
TATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTG
GTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCC
GAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTAT
GGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTG
CGAATCCTTTTGTTTAATCCTAGAAATAGGAAGGGCAATTTACAATTTAC
TT
back to top