CX295311

Overview
NameCX295311
Unique NameCX295311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295311_ssr125 microsatellite CX295311_ssr125:125..136. BLAST: Citrus ESTs to TAIR9
Ccv1_Contig11842 contig Ccv1_Contig11842:654..1355. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_NYMAL (ATP synthase subunit c, chloroplastic OS=Nymphaea alba GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_NUPAD (ATP synthase subunit c, chloroplastic OS=Nuphar advena GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_NICTO (ATP synthase subunit c, chloroplastic OS=Nicotiana tomentosiformis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_NICSY (ATP synthase subunit c, chloroplastic OS=Nicotiana sylvestris GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_NASOF (ATP synthase subunit c, chloroplastic OS=Nasturtium officinale GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_NANDO (ATP synthase subunit c, chloroplastic OS=Nandina domestica GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_MORIN (ATP synthase subunit c, chloroplastic OS=Morus indica GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_MARPO (ATP synthase subunit c, chloroplastic OS=Marchantia polymorpha GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_MANES (ATP synthase subunit c, chloroplastic OS=Manihot esculenta GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_LOBMA (ATP synthase subunit c, chloroplastic OS=Lobularia maritima GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
The following BLAST results are available for this feature:
BLAST of CX295311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_NYMAL3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Nymphaea ... [more]
ATPH_NUPAD3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Nuphar ad... [more]
ATPH_NICTO3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Nicotiana... [more]
ATPH_NICSY3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Nicotiana... [more]
ATPH_NASOF3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Nasturtiu... [more]
ATPH_NANDO3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Nandina d... [more]
ATPH_MORIN3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Morus ind... [more]
ATPH_MARPO3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Marchanti... [more]
ATPH_MANES3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Manihot e... [more]
ATPH_LOBMA3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Lobularia... [more]

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Properties
Property NameValue
Genbank descriptionC05070H05SK PhIFruit1 Citrus clementina cDNA clone C05070H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295311 ID=CX295311; Name=CX295311; organism=Citrus clementina; type=EST; length=702bp
ATATCTAATCCACCCTACTCTTGTGATTATTGTGAATTTCGATAGGGATT
CTAATAGAAATTGTTCGATTTCGTCTTTGCTTTGATGCTTTGACTGGGAA
TTGAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATT
CAAAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATT
TACAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATC
TAAAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGA
GTTCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTC
ATAATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTA
TTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGT
TATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTG
GTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCC
GAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTAT
GGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTG
CGAATCCTTTTGTTTAATCCTAGAAATAGGAAGGGCAATTTACAATTTAC
TT
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