CX295311

Overview
NameCX295311
Unique NameCX295311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295311_ssr125 microsatellite CX295311_ssr125:125..136. BLAST: Citrus ESTs to TAIR9
Ccv1_Contig11842 contig Ccv1_Contig11842:654..1355. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_ACOAM (ATP synthase subunit c, chloroplastic OS=Acorus americanus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_OLIPU (ATP synthase subunit c, chloroplastic OS=Olimarabidopsis pumila GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_DRANE (ATP synthase subunit c, chloroplastic OS=Draba nemorosa GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_CRUWA (ATP synthase subunit c, chloroplastic OS=Crucihimalaya wallichii GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_CAPBU (ATP synthase subunit c, chloroplastic OS=Capsella bursa-pastoris GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_ARATH (ATP synthase subunit c, chloroplastic OS=Arabidopsis thaliana GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_ARAHI (ATP synthase subunit c, chloroplastic OS=Arabis hirsuta GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_WELMI (ATP synthase subunit c, chloroplastic OS=Welwitschia mirabilis GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_SOYBN (ATP synthase subunit c, chloroplastic OS=Glycine max GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_PHAVU (ATP synthase subunit c, chloroplastic OS=Phaseolus vulgaris GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
The following BLAST results are available for this feature:
BLAST of CX295311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_ACOAM3.532e-2580.25ATP synthase subunit c, chloroplastic OS=Acorus am... [more]
ATPH_OLIPU4.613e-2579.01ATP synthase subunit c, chloroplastic OS=Olimarabi... [more]
ATPH_DRANE4.613e-2579.01ATP synthase subunit c, chloroplastic OS=Draba nem... [more]
ATPH_CRUWA4.613e-2579.01ATP synthase subunit c, chloroplastic OS=Crucihima... [more]
ATPH_CAPBU4.613e-2579.01ATP synthase subunit c, chloroplastic OS=Capsella ... [more]
ATPH_ARATH4.613e-2579.01ATP synthase subunit c, chloroplastic OS=Arabidops... [more]
ATPH_ARAHI4.613e-2579.01ATP synthase subunit c, chloroplastic OS=Arabis hi... [more]
ATPH_WELMI6.025e-2579.01ATP synthase subunit c, chloroplastic OS=Welwitsch... [more]
ATPH_SOYBN6.025e-2579.01ATP synthase subunit c, chloroplastic OS=Glycine m... [more]
ATPH_PHAVU6.025e-2579.01ATP synthase subunit c, chloroplastic OS=Phaseolus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05070H05SK PhIFruit1 Citrus clementina cDNA clone C05070H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295311 ID=CX295311; Name=CX295311; organism=Citrus clementina; type=EST; length=702bp
ATATCTAATCCACCCTACTCTTGTGATTATTGTGAATTTCGATAGGGATT
CTAATAGAAATTGTTCGATTTCGTCTTTGCTTTGATGCTTTGACTGGGAA
TTGAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATT
CAAAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATT
TACAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATC
TAAAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGA
GTTCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTC
ATAATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTA
TTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGT
TATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTG
GTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCC
GAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTAT
GGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTG
CGAATCCTTTTGTTTAATCCTAGAAATAGGAAGGGCAATTTACAATTTAC
TT
back to top