CX295311

Overview
NameCX295311
Unique NameCX295311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295311_ssr125 microsatellite CX295311_ssr125:125..136. BLAST: Citrus ESTs to TAIR9
Ccv1_Contig11842 contig Ccv1_Contig11842:654..1355. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_ORYSI (ATP synthase subunit c, chloroplastic OS=Oryza sativa subsp. indica GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_ORYSA (ATP synthase subunit c, chloroplastic OS=Oryza sativa GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_ORYNI (ATP synthase subunit c, chloroplastic OS=Oryza nivara GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_MAIZE (ATP synthase subunit c, chloroplastic OS=Zea mays GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_LOLPR (ATP synthase subunit c, chloroplastic OS=Lolium perenne GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_HORVU (ATP synthase subunit c, chloroplastic OS=Hordeum vulgare GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_CRYJA (ATP synthase subunit c, chloroplastic OS=Cryptomeria japonica GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGL+VGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLSVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_CHAVU (ATP synthase subunit c, chloroplastic OS=Chara vulgaris GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLISAASVIAAGLAVGL+SI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLSSIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_CERDE (ATP synthase subunit c, chloroplastic OS=Ceratophyllum demersum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLIS+ASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISSASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_BRADI (ATP synthase subunit c, chloroplastic OS=Brachypodium distachyon GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
The following BLAST results are available for this feature:
BLAST of CX295311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_ORYSI7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Oryza sat... [more]
ATPH_ORYSA7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Oryza sat... [more]
ATPH_ORYNI7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Oryza niv... [more]
ATPH_MAIZE7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Zea mays ... [more]
ATPH_LOLPR7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Lolium pe... [more]
ATPH_HORVU7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Hordeum v... [more]
ATPH_CRYJA7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Cryptomer... [more]
ATPH_CHAVU7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Chara vul... [more]
ATPH_CERDE7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Ceratophy... [more]
ATPH_BRADI7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Brachypod... [more]

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Properties
Property NameValue
Genbank descriptionC05070H05SK PhIFruit1 Citrus clementina cDNA clone C05070H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295311 ID=CX295311; Name=CX295311; organism=Citrus clementina; type=EST; length=702bp
ATATCTAATCCACCCTACTCTTGTGATTATTGTGAATTTCGATAGGGATT
CTAATAGAAATTGTTCGATTTCGTCTTTGCTTTGATGCTTTGACTGGGAA
TTGAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATT
CAAAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATT
TACAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATC
TAAAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGA
GTTCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTC
ATAATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTA
TTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGT
TATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTG
GTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCC
GAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTAT
GGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTG
CGAATCCTTTTGTTTAATCCTAGAAATAGGAAGGGCAATTTACAATTTAC
TT
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