CX295324

Overview
NameCX295324
Unique NameCX295324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig634 contig Ccv1_Contig634:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 3
Query:   12 GLEELFEQLS------ANGRRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 275
            G E L + L+        GRRG PPAA+SAI+A+ T  ++         C VC+D   +G   +++PC H YH DCIVPWL   NSCPVCR +L
Sbjct:  208 GYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQL 301          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   36 LSANGRRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 278
            LS   +R PPPAA++ + ++P V I+         CPVC  +FE     R+MPC H++H+ CI+PWL + NSCP+CR ELP
Sbjct:   44 LSDWDQRLPPPAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELP 124          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 34/73 (46.58%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   60 PPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 278
            PPPAA++ ++++P   I+    ++D  CPVC  +FE      +MPC+H++HS+CI+PWL + NSCP+CR ELP
Sbjct:   63 PPPAAKAVVESLPRTVISSA--KADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 133          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 3
Query:   60 PPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 278
            PPPAA++A++ +P  R   R  +++  CPVC  +FE    A +MPC+H++HS+CI+PWL + NSCP+CR ELP
Sbjct:   51 PPPAAKTAVENLP--RTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 121          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 34/73 (46.58%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   60 PPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 278
            PPPAA++ ++++P  R   R  +++  CPVC  +FE      +MPC+H++HS+CI+PWL + NSCP+CR ELP
Sbjct:   63 PPPAAKAVVESLP--RTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 133          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 3
Query:   60 PPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 278
            PPPAA++ ++ +P  R   R  +++  CPVC  +FE    A +MPC+H++HS CI+PWL + NSCP+CR ELP
Sbjct:   51 PPPAAKTVVENLP--RTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELP 121          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: PJA1_MOUSE (E3 ubiquitin-protein ligase Praja1 OS=Mus musculus GN=Pja1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 29/85 (34.12%), Postives = 50/85 (58.82%), Query Frame = 3
Query:   30 EQLSANGRRGPPPAARSAIDAMPTVRITQRH--LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 278
            E L+ +     PPA++ +IDA+P + +T+ H  +  +  CP+C  ++  G  A ++PC+H +H  C+  WL +  +CPVCR   P
Sbjct:  491 ESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 575          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: PJA1_HUMAN (E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens GN=PJA1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 29/85 (34.12%), Postives = 50/85 (58.82%), Query Frame = 3
Query:   30 EQLSANGRRGPPPAARSAIDAMPTVRITQRH--LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 278
            E L+ +     PPA++ +IDA+P + +T+ H  +  +  CP+C  ++  G  A ++PC+H +H  C+  WL +  +CPVCR   P
Sbjct:  556 ESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 640          
BLAST of CX295324 vs. ExPASy Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe GN=SPAP32A8.03c PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 27/87 (31.03%), Postives = 45/87 (51.72%), Query Frame = 3
Query:   12 GLEELFEQL--SANGRRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCR 266
            GL+++  QL   A G   P PA    I  M   +  +  +  +  C +C + F++  +  Q+PC H +H +CI PWL  + +C +CR
Sbjct:  351 GLDDIISQLMEQAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR 437          
The following BLAST results are available for this feature:
BLAST of CX295324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CIP8_ARATH7.074e-1844.68E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_DANRE1.742e-1645.68E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]
RN181_MOUSE5.070e-1646.58E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
RN181_BOVIN5.070e-1649.32E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
RN181_RAT1.129e-1546.58E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN181_HUMAN2.516e-1547.95E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]
PJA1_MOUSE3.401e-1234.12E3 ubiquitin-protein ligase Praja1 OS=Mus musculus... [more]
PJA1_HUMAN3.401e-1234.12E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens... [more]
YKW3_SCHPO4.910e-1131.03Uncharacterized RING finger protein P32A8.03c OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC05071A06SK PhIFruit1 Citrus clementina cDNA clone C05071A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295324 ID=CX295324; Name=CX295324; organism=Citrus clementina; type=EST; length=698bp
TTATAGGTCCTGGATTGGAAGAACTGTTTGAGCAGCTTTCAGCTAATGGT
CGACGTGGCCCTCCCCCAGCGGCGAGATCTGCAATTGATGCTATGCCCAC
CGTTAGGATCACACAGAGGCATCTCCGTTCTGATTCACACTGTCCAGTTT
GCCAAGATAAATTCGAGCTGGGGTCTGAAGCTAGACAAATGCCATGTAAC
CATATATACCACTCAGATTGTATTGTGCCATGGCTAGTGCAGCACAACTC
ATGTCCTGTATGTCGCCAAGAATTACCACTGCAAGGGTCAAGTAGCAGTC
GTATTCATCAAAGCTCAAGTGGTCAAAGTCGAAGCACCAGTTTTGGTAGT
AATGGCAGCGGAAGGGAGAATCAAGGAAGACGGAATTTGTTCTCTGGTTT
CTGGCCGTTCCGATCTTCGAATTCAAGCTCTAATCACAATGGAACAACTG
AAAGCAGTTCACCAGCAATGCACGAGAATAACCCTCACATGGGGTATTCC
GGATGGCCATTTGATTAAAGACTAGAAGTCAGTGTGTTAATAAATTGTTC
ATGATAAGTCGGTGTCTCAATTGATACCAAAAAGGACTTCTTAAAACTTT
GGAATTGATTGGGACATTGAAATCTACAAGTCCAGTGTGTCTCTTAAAGA
GTAATTGGGTGTCGTTTGTGTTCTACCGTCTTTTATGAAAATATACTT
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