CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ATRBE (30S ribosomal protein S8, chloroplastic OS=Atropa belladonna GN=rps8 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.036e-50
Identity = 102/120 (85.00%), Postives = 107/120 (89.17%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RK  VRIASTNITEN+V+ILLREGFIEN RK  EN K FLVLTLRHRRN+K PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMDRKRVVRIASTNITENIVQILLREGFIENVRKHQENNKYFLVLTLRHRRNKKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_GOSBA (30S ribosomal protein S8, chloroplastic OS=Gossypium barbadense GN=rps8 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.353e-50
Identity = 99/120 (82.50%), Postives = 108/120 (90.00%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGT++I STNITEN+V+ILLREGFI+N RK  E  K FLVLTLRHRRNRKGP+R ILNL+RISRPGLRIY NY++IPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMNRKGTIQIGSTNITENIVQILLREGFIDNVRKHRERNKYFLVLTLRHRRNRKGPHRTILNLRRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SPIOL (30S ribosomal protein S8, chloroplastic OS=Spinacia oleracea GN=rps8 PE=1 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 1.767e-50
Identity = 100/120 (83.33%), Postives = 105/120 (87.50%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRI STNITEN+VKILLREGFIENARK  E  K FLVLTLRHRRN+KGPY    +LKR+SRPGLRIY NY+RIPRIL GMGI ILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMNRKGTVRIVSTNITENIVKILLREGFIENARKHQERNKYFLVLTLRHRRNKKGPYLNTFHLKRVSRPGLRIYSNYQRIPRILGGMGIAILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_TOBAC (30S ribosomal protein S8, chloroplastic OS=Nicotiana tabacum GN=rps8 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.014e-50
Identity = 102/120 (85.00%), Postives = 106/120 (88.33%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RK  VRIASTNITEN+V+ILLREGFIEN RK  E  K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMDRKRVVRIASTNITENIVQILLREGFIENVRKHREKNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_NICTO (30S ribosomal protein S8, chloroplastic OS=Nicotiana tomentosiformis GN=rps8 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.014e-50
Identity = 102/120 (85.00%), Postives = 107/120 (89.17%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RK  VRIASTNITEN+V+ILLREGFIEN RK  EN K FLVLTLR+RRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMDRKRVVRIASTNITENIVQILLREGFIENVRKHRENNKYFLVLTLRYRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_NICSY (30S ribosomal protein S8, chloroplastic OS=Nicotiana sylvestris GN=rps8 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.014e-50
Identity = 102/120 (85.00%), Postives = 106/120 (88.33%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RK  VRIASTNITEN+V+ILLREGFIEN RK  E  K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMDRKRVVRIASTNITENIVQILLREGFIENVRKHREKNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_GOSHI (30S ribosomal protein S8, chloroplastic OS=Gossypium hirsutum GN=rps8 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.141e-50
Identity = 99/120 (82.50%), Postives = 107/120 (89.17%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGT++I STNITEN+VKILLREGFI+N RK  E  K FLVLTLRHRRNRKGP+R ILNL+RISRPGLRIY NY++IPRIL GMGIVILSTSRGIMTDR ARLE IGGEILC IW
Sbjct:   15 NADMNRKGTIQIGSTNITENIVKILLREGFIDNVRKHRERNKYFLVLTLRHRRNRKGPHRTILNLRRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCSIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_COFAR (30S ribosomal protein S8, chloroplastic OS=Coffea arabica GN=rps8 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.954e-49
Identity = 100/120 (83.33%), Postives = 105/120 (87.50%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM++K  VRI STNITEN+VKILLREGFIENARK  EN K FLVLTLRHRRNRKGP+R I NLKRISRPGLRIY N +RIPRIL GMGIVI STSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMDKKRVVRITSTNITENIVKILLREGFIENARKHRENNKYFLVLTLRHRRNRKGPHRNIFNLKRISRPGLRIYANSQRIPRILGGMGIVIFSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_POPTR (30S ribosomal protein S8, chloroplastic OS=Populus trichocarpa GN=rps8 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.552e-49
Identity = 99/120 (82.50%), Postives = 104/120 (86.67%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RKGTVRI STNITEN++KILLREGFIEN RK  E    F  LTLRHRRNRKGP R  LNLKRISRPGLRIY NY++IPRIL GMGIVILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:   15 NADMDRKGTVRIPSTNITENIIKILLREGFIENVRKHQEGNFFFFALTLRHRRNRKGPCRTSLNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLERIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_POPAL (30S ribosomal protein S8, chloroplastic OS=Populus alba GN=rps8 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.552e-49
Identity = 99/120 (82.50%), Postives = 104/120 (86.67%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RKGTVRI STNITEN++KILLREGFIEN RK  E    F  LTLRHRRNRKGP R  LNLKRISRPGLRIY NY++IPRIL GMGIVILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:   15 NADMDRKGTVRIPSTNITENIIKILLREGFIENVRKHQEGNFFFFALTLRHRRNRKGPCRTSLNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLERIGGEILCYIW 134
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_ATRBE1.036e-5085.0030S ribosomal protein S8, chloroplastic OS=Atropa ... [more]
RR8_GOSBA1.353e-5082.5030S ribosomal protein S8, chloroplastic OS=Gossypi... [more]
RR8_SPIOL1.767e-5083.3330S ribosomal protein S8, chloroplastic OS=Spinaci... [more]
RR8_TOBAC3.014e-5085.0030S ribosomal protein S8, chloroplastic OS=Nicotia... [more]
RR8_NICTO3.014e-5085.0030S ribosomal protein S8, chloroplastic OS=Nicotia... [more]
RR8_NICSY3.014e-5085.0030S ribosomal protein S8, chloroplastic OS=Nicotia... [more]
RR8_GOSHI5.141e-5082.5030S ribosomal protein S8, chloroplastic OS=Gossypi... [more]
RR8_COFAR1.954e-4983.3330S ribosomal protein S8, chloroplastic OS=Coffea ... [more]
RR8_POPTR2.552e-4982.5030S ribosomal protein S8, chloroplastic OS=Populus... [more]
RR8_POPAL2.552e-4982.5030S ribosomal protein S8, chloroplastic OS=Populus... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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