CX295334
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_CYAP4 (30S ribosomal protein S8 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpsH PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.356e-25 Identity = 55/120 (45.83%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ R T + +T +T ++ ++L EGFI + ++ + K LV++L++R ++ P I LKRIS+PGLR+Y N R +PR+L G+GI I+STS GIMTDR AR +GGE+LCY+W Sbjct: 16 NANLARHPTTEVPATRMTRSIAQVLKNEGFINDFEEIGDGVKLNLVISLKYRGKQRQP--TITALKRISKPGLRVYSNRRELPRVLGGIGIAIISTSSGIMTDRDARRSGVGGEVLCYVW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ADICA (30S ribosomal protein S8, chloroplastic OS=Adiantum capillus-veneris GN=rps8 PE=2 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 3.356e-25 Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+ RK RI T +T +V+ILL EGF+++ + E K F+ + LR+ K PY + ++ IS+PGLRIY ++ RIP+IL GMGI ILSTS G++TDR AR + GGEILC+IW Sbjct: 15 NANTKRKAMTRIPVTKMTRGIVQILLEEGFLKSVTEHTEGGKIFMDVKLRYFGKEKKPY--VATIRYISKPGLRIYCDHIRIPKILGGMGIAILSTSYGLITDREARRRKTGGEILCHIW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_THEPX (30S ribosomal protein S8 OS=Thermoanaerobacter sp. (strain X514) GN=rpsH PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25 Identity = 55/120 (45.83%), Postives = 84/120 (70.00%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ R TV I ++N+ + I+L+EGFI++ ++ + K L LTL++ N++ R I LKRIS+PGLR+Y + +PR+L G+GI I+STS+GIMTD+ AR +GGE++CYIW Sbjct: 16 NANIARHETVEIPASNMKRAIAMIMLKEGFIKSVEEIDDGKGGILKLTLKYGPNKE---RVISGLKRISKPGLRVYARHDELPRVLGGLGIAIISTSKGIMTDKEARKAGVGGEVICYIW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_THEP3 (30S ribosomal protein S8 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsH PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25 Identity = 55/120 (45.83%), Postives = 84/120 (70.00%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ R TV I ++N+ + I+L+EGFI++ ++ + K L LTL++ N++ R I LKRIS+PGLR+Y + +PR+L G+GI I+STS+GIMTD+ AR +GGE++CYIW Sbjct: 16 NANIARHETVEIPASNMKRAIAMIMLKEGFIKSVEEIDDGKGGILKLTLKYGPNKE---RVISGLKRISKPGLRVYARHDELPRVLGGLGIAIISTSKGIMTDKEARKAGVGGEVICYIW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ANASP (30S ribosomal protein S8 OS=Anabaena sp. (strain PCC 7120) GN=rpsH PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25 Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+M R T + +T +T ++ K+L EGFI + + K LV+ L+++ + P I LKR+S+PGLR+Y N + +PR+L G+GI I+STS GIMTDR AR + +GGE+LCY+W Sbjct: 16 NANMARHQTTLVPATKMTRSIAKVLQEEGFIAEISEEGDEVKRNLVIALKYKGKNRQPL--ITALKRVSKPGLRVYSNRKELPRVLGGIGIAIISTSSGIMTDREARRQNVGGEVLCYVW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ACAM1 (30S ribosomal protein S8 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsH PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25 Identity = 58/121 (47.93%), Postives = 84/121 (69.42%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ R T ++ ST +T +V +L EGFI + + E + LV+TL++R + +PI+N L+RIS+PGLR+Y N R +PR+L G+GI I+STS GIMTDR AR +GGE+LCY+W Sbjct: 16 NANLARHQTTQVMSTRMTRSVASVLKDEGFITSFEESGEGVERRLVITLKYRGKNR---QPIINTLQRISKPGLRVYSNRRDLPRVLGGIGIAIISTSSGIMTDRDARQTGVGGEVLCYVW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_CYAA5 (30S ribosomal protein S8 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsH PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25 Identity = 54/121 (44.63%), Postives = 86/121 (71.07%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA R T + +T +T ++ ++L EGFIE ++ E K+ LV++L+++ + +PI+N L+R+S+PGLR+Y N + +PR+L G+GI I+STS+GIMTDR AR + +GGE+LCY+W Sbjct: 16 NACAVRHPTTVVPTTKMTRSIAQVLKEEGFIEGFEEVGEGVKKHLVISLKYKSRGR---QPIINTLQRVSKPGLRVYSNRKDLPRVLGGIGIAIISTSKGIMTDREARRQNVGGEVLCYVW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ANAVT (30S ribosomal protein S8 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsH PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25 Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+M R T + +T +T ++ K+L EGFI + + K LV+ L+++ + P I LKR+S+PGLR+Y N + +PR+L G+GI I+STS GIMTDR AR + +GGE+LCY+W Sbjct: 16 NANMARHQTTLVPATKMTRSIAKVLQEEGFIAEISEEGDEVKRNLVIALKYKGKNRQPL--ITALKRVSKPGLRVYSNRKELPRVLGGIGIAIISTSSGIMTDREARRQNLGGEVLCYVW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PSEAK (30S ribosomal protein S8, chloroplastic OS=Pseudendoclonium akinetum GN=rps8 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25 Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA + + TV + +T I + +IL +EG+IE+ L N + L +TL++ N+K P I NLKR+S PGLR Y NY+ IP +L+GMG+VILSTS+GIMTDR AR ++GGE+LC IW Sbjct: 15 NAYLVKHETVYVLNTKINRKISEILKKEGYIESVN-LSTNSLQKLEITLKYLGNQKKP--GITNLKRLSWPGLRFYSNYKDIPPVLNGMGVVILSTSKGIMTDREARANKVGGELLCSIW 131
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SYNY3 (30S ribosomal protein S8 OS=Synechocystis sp. (strain PCC 6803) GN=rpsH PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.275e-24 Identity = 58/120 (48.33%), Postives = 82/120 (68.33%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA R T ++ +T +T ++ K+L EGFIE+ + E + LVLTL+++ + P I L+R+S+PGLR+Y ++IPR+L G+GI I+STS GIMTDR AR + IGGEILCYIW Sbjct: 16 NACAVRHSTTQVPTTKMTLSIAKVLKSEGFIEDYSETGEGINKMLVLTLKYKGKTRQPL--INTLQRVSKPGLRVYSPSKKIPRVLGGIGIAIVSTSHGIMTDREARRQGIGGEILCYIW 133 The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bpback to top |