CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_CYAP4 (30S ribosomal protein S8 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpsH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.356e-25
Identity = 55/120 (45.83%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ R  T  + +T +T ++ ++L  EGFI +  ++ +  K  LV++L++R  ++ P   I  LKRIS+PGLR+Y N R +PR+L G+GI I+STS GIMTDR AR   +GGE+LCY+W
Sbjct:   16 NANLARHPTTEVPATRMTRSIAQVLKNEGFINDFEEIGDGVKLNLVISLKYRGKQRQP--TITALKRISKPGLRVYSNRRELPRVLGGIGIAIISTSSGIMTDRDARRSGVGGEVLCYVW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ADICA (30S ribosomal protein S8, chloroplastic OS=Adiantum capillus-veneris GN=rps8 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.356e-25
Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+  RK   RI  T +T  +V+ILL EGF+++  +  E  K F+ + LR+    K PY  +  ++ IS+PGLRIY ++ RIP+IL GMGI ILSTS G++TDR AR  + GGEILC+IW
Sbjct:   15 NANTKRKAMTRIPVTKMTRGIVQILLEEGFLKSVTEHTEGGKIFMDVKLRYFGKEKKPY--VATIRYISKPGLRIYCDHIRIPKILGGMGIAILSTSYGLITDREARRRKTGGEILCHIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_THEPX (30S ribosomal protein S8 OS=Thermoanaerobacter sp. (strain X514) GN=rpsH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 55/120 (45.83%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ R  TV I ++N+   +  I+L+EGFI++  ++ + K   L LTL++  N++   R I  LKRIS+PGLR+Y  +  +PR+L G+GI I+STS+GIMTD+ AR   +GGE++CYIW
Sbjct:   16 NANIARHETVEIPASNMKRAIAMIMLKEGFIKSVEEIDDGKGGILKLTLKYGPNKE---RVISGLKRISKPGLRVYARHDELPRVLGGLGIAIISTSKGIMTDKEARKAGVGGEVICYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_THEP3 (30S ribosomal protein S8 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 55/120 (45.83%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ R  TV I ++N+   +  I+L+EGFI++  ++ + K   L LTL++  N++   R I  LKRIS+PGLR+Y  +  +PR+L G+GI I+STS+GIMTD+ AR   +GGE++CYIW
Sbjct:   16 NANIARHETVEIPASNMKRAIAMIMLKEGFIKSVEEIDDGKGGILKLTLKYGPNKE---RVISGLKRISKPGLRVYARHDELPRVLGGLGIAIISTSKGIMTDKEARKAGVGGEVICYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ANASP (30S ribosomal protein S8 OS=Anabaena sp. (strain PCC 7120) GN=rpsH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+M R  T  + +T +T ++ K+L  EGFI    +  +  K  LV+ L+++   + P   I  LKR+S+PGLR+Y N + +PR+L G+GI I+STS GIMTDR AR + +GGE+LCY+W
Sbjct:   16 NANMARHQTTLVPATKMTRSIAKVLQEEGFIAEISEEGDEVKRNLVIALKYKGKNRQPL--ITALKRVSKPGLRVYSNRKELPRVLGGIGIAIISTSSGIMTDREARRQNVGGEVLCYVW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ACAM1 (30S ribosomal protein S8 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 58/121 (47.93%), Postives = 84/121 (69.42%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ R  T ++ ST +T +V  +L  EGFI +  +  E  +  LV+TL++R   +   +PI+N L+RIS+PGLR+Y N R +PR+L G+GI I+STS GIMTDR AR   +GGE+LCY+W
Sbjct:   16 NANLARHQTTQVMSTRMTRSVASVLKDEGFITSFEESGEGVERRLVITLKYRGKNR---QPIINTLQRISKPGLRVYSNRRDLPRVLGGIGIAIISTSSGIMTDRDARQTGVGGEVLCYVW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_CYAA5 (30S ribosomal protein S8 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25
Identity = 54/121 (44.63%), Postives = 86/121 (71.07%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA   R  T  + +T +T ++ ++L  EGFIE   ++ E  K+ LV++L+++   +   +PI+N L+R+S+PGLR+Y N + +PR+L G+GI I+STS+GIMTDR AR + +GGE+LCY+W
Sbjct:   16 NACAVRHPTTVVPTTKMTRSIAQVLKEEGFIEGFEEVGEGVKKHLVISLKYKSRGR---QPIINTLQRVSKPGLRVYSNRKDLPRVLGGIGIAIISTSKGIMTDREARRQNVGGEVLCYVW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ANAVT (30S ribosomal protein S8 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25
Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+M R  T  + +T +T ++ K+L  EGFI    +  +  K  LV+ L+++   + P   I  LKR+S+PGLR+Y N + +PR+L G+GI I+STS GIMTDR AR + +GGE+LCY+W
Sbjct:   16 NANMARHQTTLVPATKMTRSIAKVLQEEGFIAEISEEGDEVKRNLVIALKYKGKNRQPL--ITALKRVSKPGLRVYSNRKELPRVLGGIGIAIISTSSGIMTDREARRQNLGGEVLCYVW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PSEAK (30S ribosomal protein S8, chloroplastic OS=Pseudendoclonium akinetum GN=rps8 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25
Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA + +  TV + +T I   + +IL +EG+IE+   L  N  + L +TL++  N+K P   I NLKR+S PGLR Y NY+ IP +L+GMG+VILSTS+GIMTDR AR  ++GGE+LC IW
Sbjct:   15 NAYLVKHETVYVLNTKINRKISEILKKEGYIESVN-LSTNSLQKLEITLKYLGNQKKP--GITNLKRLSWPGLRFYSNYKDIPPVLNGMGVVILSTSKGIMTDREARANKVGGELLCSIW 131          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SYNY3 (30S ribosomal protein S8 OS=Synechocystis sp. (strain PCC 6803) GN=rpsH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.275e-24
Identity = 58/120 (48.33%), Postives = 82/120 (68.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA   R  T ++ +T +T ++ K+L  EGFIE+  +  E   + LVLTL+++   + P   I  L+R+S+PGLR+Y   ++IPR+L G+GI I+STS GIMTDR AR + IGGEILCYIW
Sbjct:   16 NACAVRHSTTQVPTTKMTLSIAKVLKSEGFIEDYSETGEGINKMLVLTLKYKGKTRQPL--INTLQRVSKPGLRVYSPSKKIPRVLGGIGIAIVSTSHGIMTDREARRQGIGGEILCYIW 133          
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS8_CYAP43.356e-2545.8330S ribosomal protein S8 OS=Cyanothece sp. (strain... [more]
RR8_ADICA3.356e-2549.1730S ribosomal protein S8, chloroplastic OS=Adiantu... [more]
RS8_THEPX5.724e-2545.8330S ribosomal protein S8 OS=Thermoanaerobacter sp.... [more]
RS8_THEP35.724e-2545.8330S ribosomal protein S8 OS=Thermoanaerobacter pse... [more]
RS8_ANASP7.476e-2545.0030S ribosomal protein S8 OS=Anabaena sp. (strain P... [more]
RS8_ACAM17.476e-2547.9330S ribosomal protein S8 OS=Acaryochloris marina (... [more]
RS8_CYAA59.763e-2544.6330S ribosomal protein S8 OS=Cyanothece sp. (strain... [more]
RS8_ANAVT9.763e-2545.0030S ribosomal protein S8 OS=Anabaena variabilis (s... [more]
RR8_PSEAK9.763e-2550.0030S ribosomal protein S8, chloroplastic OS=Pseuden... [more]
RS8_SYNY31.275e-2448.3330S ribosomal protein S8 OS=Synechocystis sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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