CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_STRT2 (30S ribosomal protein S8 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 47/120 (39.17%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+  +   + + ++NI + + +IL REGF++N   + ++K+  + + L++ +N +   R I NLKRIS+PGLR+Y     IP++L+G+GI I+STS G++TD+ AR + +GGE++ Y+W
Sbjct:   16 NANQAKHEVLEVPASNIKKGIAEILKREGFVKNVEVIEDDKQGIIRVFLKYGQNGE---RVITNLKRISKPGLRVYSKREDIPKVLNGLGIAIISTSEGLLTDKEARQKNVGGEVIAYVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_STRT1 (30S ribosomal protein S8 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 47/120 (39.17%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+  +   + + ++NI + + +IL REGF++N   + ++K+  + + L++ +N +   R I NLKRIS+PGLR+Y     IP++L+G+GI I+STS G++TD+ AR + +GGE++ Y+W
Sbjct:   16 NANQAKHEVLEVPASNIKKGIAEILKREGFVKNVEVIEDDKQGIIRVFLKYGQNGE---RVITNLKRISKPGLRVYSKREDIPKVLNGLGIAIISTSEGLLTDKEARQKNVGGEVIAYVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ODOSI (30S ribosomal protein S8, chloroplastic OS=Odontella sinensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 49/120 (40.83%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+M +   V+I +T +++ +  IL  EGFIE+    +EN  +FL+++L+++   + P   I  + R+S+PGLR+Y   +++P++LD +GI I+STS+G+MT+  A+   IGGE+LCYIW
Sbjct:   15 NANMIKHQIVQIPATKMSKAITNILKEEGFIEDYEIYMENSYQFLLISLKYKGKSREPV--ICKMVRVSKPGLRVYSKSKKLPKVLDNLGIAIISTSKGVMTNLKAKELGIGGEVLCYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CHLRE (30S ribosomal protein S8, chloroplastic OS=Chlamydomonas reinhardtii GN=rps8 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 56/122 (45.90%), Postives = 82/122 (67.21%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRP--ILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA + +K +V I  T + +N+ +IL +EGFI+  +  ++++   + L  R ++  +G  +   I NLKRIS+PGLRIY N++ I RIL G GIVI+ST  G+MTDR ARL  IGGE+LC +W
Sbjct:   20 NACLAKKSSVSIPFTRLNQNIAQILEQEGFIQTYQVSLDSQDLTIRLKYRSKKIYRGKKKESCITNLKRISKPGLRIYSNHKDILRILGGTGIVIVSTPEGLMTDREARLRGIGGELLCSVW 141          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_PROMA (30S ribosomal protein S8 OS=Prochlorococcus marinus GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 50/120 (41.67%), Postives = 79/120 (65.83%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA   R    RI ++ ++ ++ K+L  EGFI    +  E  K  LVL L++    + P   I ++KR+S+PGLRIY N R +P++L G+G+ I+STS+G+M+DR AR + +GGE+LCY++
Sbjct:   16 NASQKRHENTRIPASRMSRSIAKVLQNEGFISQVSEEGEGVKTQLVLELKYSGKHRHP--TIRSMKRVSKPGLRIYKNNRGLPKVLGGLGVAIISTSKGVMSDRDARKQGVGGEVLCYVY 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_LYSSC (30S ribosomal protein S8 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 45/120 (37.50%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+M R   + + ++N+ + + +IL REGF+ +   + +NK+  + + L++ ++ +   R I  LKRIS+PGLR+Y     +P++L+G+GI ++STS+G++TD+ AR +++GGE+L Y+W
Sbjct:   16 NANMVRHEKLEVPASNVKKEIAEILKREGFVRDVEYVEDNKQGIIRIFLKYGKDNE---RVITGLKRISKPGLRVYAKTNEVPKVLNGLGIALVSTSQGLLTDKEARAKQVGGEVLAYVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_GEOTN (30S ribosomal protein S8 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 51/120 (42.50%), Postives = 79/120 (65.83%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+M R   + + ++ I   + +IL REGFI +   + +NK+  L + L++  N +   R I  LKRIS+PGLR+Y     +PR+L+G+GI ILSTS+GI+TD+ AR +  GGE++ Y+W
Sbjct:   16 NANMVRHEKLEVPASKIKREIAEILKREGFIRDVEYIEDNKQGILRIFLKYGPNNE---RVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGILTDKEARQKGTGGEVIAYVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_DICTD (30S ribosomal protein S8 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 53/120 (44.17%), Postives = 80/120 (66.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+M R  TV +  + + E +++ILLREG+I     + E  ++++ + L++    KG    I ++KR+S+PG R Y N   IPR+L G+GI ILSTS+GIMTD+ ARL  IGGE++C +W
Sbjct:   16 NANMRRHPTVDVPYSKMKEKIIEILLREGYIAKYEVIGEIPQKYIRVYLKY----KGKTPVIQDVKRVSKPGRRYYVNKEEIPRVLGGLGIAILSTSKGIMTDKEARLLGIGGELICMVW 131          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SYNSC (30S ribosomal protein S8 OS=Synechococcus sp. (strain CC9605) GN=rpsH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 50/120 (41.67%), Postives = 81/120 (67.50%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA   R  T +I ++ +T ++ K+L +EGFI    +  E  +  LVL L++    + P   I +++R+S+PGLRIY N R +P++L G+G+ I+STS+G+M+DR AR E +GGE+LCY++
Sbjct:   16 NASEKRHETTKIPASRMTRSIAKVLQQEGFISEISEQGEGIRTELVLALKYSGKHRLP--TIRSMQRVSKPGLRIYKNTRGLPKVLGGLGVAIISTSKGVMSDRDARREGVGGEVLCYVY 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SYNS9 (30S ribosomal protein S8 OS=Synechococcus sp. (strain CC9902) GN=rpsH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 49/120 (40.83%), Postives = 82/120 (68.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA   R  T ++ ++ +T ++ K+L +EGFI    +  E  +  LVL+L++    + P   I +++R+S+PGLRIY N R +P++L G+G+ I+STS+G+M+DR AR E +GGE+LCY++
Sbjct:   16 NASEKRHETTKVPASRMTRSIAKVLQQEGFISEINEEGEGFRAELVLSLKYSGKHRLP--TIRSMQRVSKPGLRIYKNTRGLPKVLGGLGVAIISTSKGVMSDRDARREGVGGEVLCYVY 133          
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS8_STRT22.659e-2239.1730S ribosomal protein S8 OS=Streptococcus thermoph... [more]
RS8_STRT12.659e-2239.1730S ribosomal protein S8 OS=Streptococcus thermoph... [more]
RR8_ODOSI2.659e-2240.8330S ribosomal protein S8, chloroplastic OS=Odontel... [more]
RR8_CHLRE2.659e-2245.9030S ribosomal protein S8, chloroplastic OS=Chlamyd... [more]
RS8_PROMA3.473e-2241.6730S ribosomal protein S8 OS=Prochlorococcus marinu... [more]
RS8_LYSSC3.473e-2237.5030S ribosomal protein S8 OS=Lysinibacillus sphaeri... [more]
RS8_GEOTN3.473e-2242.5030S ribosomal protein S8 OS=Geobacillus thermodeni... [more]
RS8_DICTD3.473e-2244.1730S ribosomal protein S8 OS=Dictyoglomus turgidum ... [more]
RS8_SYNSC4.535e-2241.6730S ribosomal protein S8 OS=Synechococcus sp. (str... [more]
RS8_SYNS94.535e-2240.8330S ribosomal protein S8 OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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