CX295334
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_STRT2 (30S ribosomal protein S8 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsH PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22 Identity = 47/120 (39.17%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+ + + + ++NI + + +IL REGF++N + ++K+ + + L++ +N + R I NLKRIS+PGLR+Y IP++L+G+GI I+STS G++TD+ AR + +GGE++ Y+W Sbjct: 16 NANQAKHEVLEVPASNIKKGIAEILKREGFVKNVEVIEDDKQGIIRVFLKYGQNGE---RVITNLKRISKPGLRVYSKREDIPKVLNGLGIAIISTSEGLLTDKEARQKNVGGEVIAYVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_STRT1 (30S ribosomal protein S8 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsH PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22 Identity = 47/120 (39.17%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+ + + + ++NI + + +IL REGF++N + ++K+ + + L++ +N + R I NLKRIS+PGLR+Y IP++L+G+GI I+STS G++TD+ AR + +GGE++ Y+W Sbjct: 16 NANQAKHEVLEVPASNIKKGIAEILKREGFVKNVEVIEDDKQGIIRVFLKYGQNGE---RVITNLKRISKPGLRVYSKREDIPKVLNGLGIAIISTSEGLLTDKEARQKNVGGEVIAYVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ODOSI (30S ribosomal protein S8, chloroplastic OS=Odontella sinensis GN=rps8 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22 Identity = 49/120 (40.83%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+M + V+I +T +++ + IL EGFIE+ +EN +FL+++L+++ + P I + R+S+PGLR+Y +++P++LD +GI I+STS+G+MT+ A+ IGGE+LCYIW Sbjct: 15 NANMIKHQIVQIPATKMSKAITNILKEEGFIEDYEIYMENSYQFLLISLKYKGKSREPV--ICKMVRVSKPGLRVYSKSKKLPKVLDNLGIAIISTSKGVMTNLKAKELGIGGEVLCYIW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CHLRE (30S ribosomal protein S8, chloroplastic OS=Chlamydomonas reinhardtii GN=rps8 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22 Identity = 56/122 (45.90%), Postives = 82/122 (67.21%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRP--ILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA + +K +V I T + +N+ +IL +EGFI+ + ++++ + L R ++ +G + I NLKRIS+PGLRIY N++ I RIL G GIVI+ST G+MTDR ARL IGGE+LC +W Sbjct: 20 NACLAKKSSVSIPFTRLNQNIAQILEQEGFIQTYQVSLDSQDLTIRLKYRSKKIYRGKKKESCITNLKRISKPGLRIYSNHKDILRILGGTGIVIVSTPEGLMTDREARLRGIGGELLCSVW 141
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_PROMA (30S ribosomal protein S8 OS=Prochlorococcus marinus GN=rpsH PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22 Identity = 50/120 (41.67%), Postives = 79/120 (65.83%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA R RI ++ ++ ++ K+L EGFI + E K LVL L++ + P I ++KR+S+PGLRIY N R +P++L G+G+ I+STS+G+M+DR AR + +GGE+LCY++ Sbjct: 16 NASQKRHENTRIPASRMSRSIAKVLQNEGFISQVSEEGEGVKTQLVLELKYSGKHRHP--TIRSMKRVSKPGLRIYKNNRGLPKVLGGLGVAIISTSKGVMSDRDARKQGVGGEVLCYVY 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_LYSSC (30S ribosomal protein S8 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsH PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22 Identity = 45/120 (37.50%), Postives = 84/120 (70.00%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+M R + + ++N+ + + +IL REGF+ + + +NK+ + + L++ ++ + R I LKRIS+PGLR+Y +P++L+G+GI ++STS+G++TD+ AR +++GGE+L Y+W Sbjct: 16 NANMVRHEKLEVPASNVKKEIAEILKREGFVRDVEYVEDNKQGIIRIFLKYGKDNE---RVITGLKRISKPGLRVYAKTNEVPKVLNGLGIALVSTSQGLLTDKEARAKQVGGEVLAYVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_GEOTN (30S ribosomal protein S8 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsH PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22 Identity = 51/120 (42.50%), Postives = 79/120 (65.83%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+M R + + ++ I + +IL REGFI + + +NK+ L + L++ N + R I LKRIS+PGLR+Y +PR+L+G+GI ILSTS+GI+TD+ AR + GGE++ Y+W Sbjct: 16 NANMVRHEKLEVPASKIKREIAEILKREGFIRDVEYIEDNKQGILRIFLKYGPNNE---RVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGILTDKEARQKGTGGEVIAYVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_DICTD (30S ribosomal protein S8 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rpsH PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22 Identity = 53/120 (44.17%), Postives = 80/120 (66.67%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+M R TV + + + E +++ILLREG+I + E ++++ + L++ KG I ++KR+S+PG R Y N IPR+L G+GI ILSTS+GIMTD+ ARL IGGE++C +W Sbjct: 16 NANMRRHPTVDVPYSKMKEKIIEILLREGYIAKYEVIGEIPQKYIRVYLKY----KGKTPVIQDVKRVSKPGRRYYVNKEEIPRVLGGLGIAILSTSKGIMTDKEARLLGIGGELICMVW 131
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SYNSC (30S ribosomal protein S8 OS=Synechococcus sp. (strain CC9605) GN=rpsH PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22 Identity = 50/120 (41.67%), Postives = 81/120 (67.50%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA R T +I ++ +T ++ K+L +EGFI + E + LVL L++ + P I +++R+S+PGLRIY N R +P++L G+G+ I+STS+G+M+DR AR E +GGE+LCY++ Sbjct: 16 NASEKRHETTKIPASRMTRSIAKVLQQEGFISEISEQGEGIRTELVLALKYSGKHRLP--TIRSMQRVSKPGLRIYKNTRGLPKVLGGLGVAIISTSKGVMSDRDARREGVGGEVLCYVY 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SYNS9 (30S ribosomal protein S8 OS=Synechococcus sp. (strain CC9902) GN=rpsH PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22 Identity = 49/120 (40.83%), Postives = 82/120 (68.33%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA R T ++ ++ +T ++ K+L +EGFI + E + LVL+L++ + P I +++R+S+PGLRIY N R +P++L G+G+ I+STS+G+M+DR AR E +GGE+LCY++ Sbjct: 16 NASEKRHETTKVPASRMTRSIAKVLQQEGFISEINEEGEGFRAELVLSLKYSGKHRLP--TIRSMQRVSKPGLRIYKNTRGLPKVLGGLGVAIISTSKGVMSDRDARREGVGGEVLCYVY 133 The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bpback to top |