CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PIPCE (30S ribosomal protein S8, chloroplastic OS=Piper cenocladum GN=rps8 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.552e-49
Identity = 98/120 (81.67%), Postives = 107/120 (89.17%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA M++KGTVRIASTN+TEN+V+ILLREGFIEN RK  EN+K FLV TLRHRRNRKG  R ILNLKRISRPGLRIY NY++IPRIL GMGIVILSTSRG+MTDR ARLE IGGEILCYIW
Sbjct:   15 NAHMDKKGTVRIASTNMTENIVRILLREGFIENVRKHRENQKNFLVSTLRHRRNRKGTSRTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGVMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_LACSA (30S ribosomal protein S8, chloroplastic OS=Lactuca sativa GN=rps8 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.332e-49
Identity = 98/120 (81.67%), Postives = 106/120 (88.33%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM RK  VR+ASTNI++++VKILLREGFIEN RK  EN K FLVLTLRHRRNRK  YR +LNLKRISRPGLRIY NY+RIPRIL GMGIVILSTS+GIMTDR ARLERIGGEILCYIW
Sbjct:   15 NADMYRKSVVRVASTNISQSIVKILLREGFIENVRKHRENNKSFLVLTLRHRRNRKRTYRNLLNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSQGIMTDREARLERIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_IPOPU (30S ribosomal protein S8, chloroplastic OS=Ipomoea purpurea GN=rps8 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.332e-49
Identity = 98/120 (81.67%), Postives = 104/120 (86.67%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RK  VRIASTNITEN+V+ILLREGFIEN RK  E  K F VLTLRHRRNRK PYR I NLKRISRPGLRIY NY+RIP+IL GMG+VILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMDRKRVVRIASTNITENIVRILLREGFIENVRKHREKNKNFFVLTLRHRRNRKRPYRNIFNLKRISRPGLRIYSNYQRIPKILGGMGVVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SOYBN (30S ribosomal protein S8, chloroplastic OS=Glycine max GN=rps8 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.352e-49
Identity = 97/120 (80.83%), Postives = 105/120 (87.50%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KG V+I  TNITEN+VKILLREGF+EN RK  EN K FLVLTLR+RRNRKG Y+  LNLKRIS PGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLERIGGE+LCYIW
Sbjct:   15 NADMNKKGMVQIPFTNITENIVKILLREGFVENVRKHRENDKYFLVLTLRYRRNRKGSYKSFLNLKRISTPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLERIGGEVLCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_BUXMI (30S ribosomal protein S8, chloroplastic OS=Buxus microphylla GN=rps8 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.352e-49
Identity = 101/120 (84.17%), Postives = 107/120 (89.17%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM++KGTVRIASTNITEN+VKILLREGFIEN RK  E+ K FLV TLRHRR+RKGPYR IL  KRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMDKKGTVRIASTNITENIVKILLREGFIENVRKHRESNKYFLVSTLRHRRSRKGPYRTIL--KRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 132
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_AETCO (30S ribosomal protein S8, chloroplastic OS=Aethionema cordifolium GN=rps8 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.352e-49
Identity = 97/120 (80.83%), Postives = 107/120 (89.17%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRI STNITE++VKILLREGFIEN RK  EN + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTSRGIMTDR ARL+R+GGEILCYIW
Sbjct:   15 NADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSRGIMTDREARLKRVGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_NANDO (30S ribosomal protein S8, chloroplastic OS=Nandina domestica GN=rps8 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.424e-49
Identity = 101/120 (84.17%), Postives = 106/120 (88.33%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM++KGTVRIASTNITE +VKILLREGFIEN RK  EN + FLV TLRHRRNRKGPYR IL  KRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMDKKGTVRIASTNITETIVKILLREGFIENVRKHRENDQFFLVSTLRHRRNRKGPYRTIL--KRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 132
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_NASOF (30S ribosomal protein S8, chloroplastic OS=Nasturtium officinale GN=rps8 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.696e-49
Identity = 97/120 (80.83%), Postives = 107/120 (89.17%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRI STNITE++VKILLREGFIEN RK  EN + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:   15 NADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CRUWA (30S ribosomal protein S8, chloroplastic OS=Crucihimalaya wallichii GN=rps8 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.696e-49
Identity = 97/120 (80.83%), Postives = 107/120 (89.17%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRI STNITE++VKILLREGFIEN RK  EN + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:   15 NADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_BARVE (30S ribosomal protein S8, chloroplastic OS=Barbarea verna GN=rps8 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.696e-49
Identity = 97/120 (80.83%), Postives = 107/120 (89.17%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRI STNITE++VKILLREGFIEN RK  EN + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:   15 NADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_PIPCE2.552e-4981.6730S ribosomal protein S8, chloroplastic OS=Piper c... [more]
RR8_LACSA3.332e-4981.6730S ribosomal protein S8, chloroplastic OS=Lactuca... [more]
RR8_IPOPU3.332e-4981.6730S ribosomal protein S8, chloroplastic OS=Ipomoea... [more]
RR8_SOYBN4.352e-4980.8330S ribosomal protein S8, chloroplastic OS=Glycine... [more]
RR8_BUXMI4.352e-4984.1730S ribosomal protein S8, chloroplastic OS=Buxus m... [more]
RR8_AETCO4.352e-4980.8330S ribosomal protein S8, chloroplastic OS=Aethion... [more]
RR8_NANDO7.424e-4984.1730S ribosomal protein S8, chloroplastic OS=Nandina... [more]
RR8_NASOF9.696e-4980.8330S ribosomal protein S8, chloroplastic OS=Nasturt... [more]
RR8_CRUWA9.696e-4980.8330S ribosomal protein S8, chloroplastic OS=Crucihi... [more]
RR8_BARVE9.696e-4980.8330S ribosomal protein S8, chloroplastic OS=Barbare... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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