CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ARATH (30S ribosomal protein S8, chloroplastic OS=Arabidopsis thaliana GN=rps8 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.696e-49
Identity = 97/120 (80.83%), Postives = 107/120 (89.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRI STNITE++VKILLREGFIEN RK  EN + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:   15 NADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ARAHI (30S ribosomal protein S8, chloroplastic OS=Arabis hirsuta GN=rps8 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.266e-48
Identity = 97/120 (80.83%), Postives = 107/120 (89.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRI STNITE++VKILLREGFIEN RK  EN + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:   15 NADMNRKGTVRIESTNITESIVKILLREGFIENVRKHRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_OLIPU (30S ribosomal protein S8, chloroplastic OS=Olimarabidopsis pumila GN=rps8 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.684e-48
Identity = 96/120 (80.00%), Postives = 107/120 (89.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRI STNITE++VKILLREGFIEN RK  E+ + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:   15 NADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRESNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_LOBMA (30S ribosomal protein S8, chloroplastic OS=Lobularia maritima GN=rps8 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.684e-48
Identity = 96/120 (80.00%), Postives = 107/120 (89.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRI STNITE++VKILLREGFIEN RK  EN + FL+LTLRHRRN+K  ++ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:   15 NADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLILTLRHRRNKKESHKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CAPBU (30S ribosomal protein S8, chloroplastic OS=Capsella bursa-pastoris GN=rps8 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.684e-48
Identity = 96/120 (80.00%), Postives = 107/120 (89.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRI STNITE++VKILLREGFIEN RK  E+ + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:   15 NADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRESNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_AETGR (30S ribosomal protein S8, chloroplastic OS=Aethionema grandiflora GN=rps8 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.812e-48
Identity = 95/120 (79.17%), Postives = 106/120 (88.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRI STNITE++VKILLREGFIEN RK  EN ++FL+LTLRHRRN+K  Y+ I NLKRISRPGLRIY N +RI RIL G+GIVILSTSRGIMTDR ARL+R+GGEILCYIW
Sbjct:   15 NADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENTQDFLILTLRHRRNKKESYKTIFNLKRISRPGLRIYSNSQRITRILGGIGIVILSTSRGIMTDREARLKRVGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_OENEH (30S ribosomal protein S8, chloroplastic OS=Oenothera elata subsp. hookeri GN=rps8 PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 6.285e-48
Identity = 99/124 (79.84%), Postives = 104/124 (83.87%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPI----LNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            N DMNRKGTVRI STN+ E +VKILLREGFIEN RK  ENKK FLVLTLRHRRNRKGP        LNLKRISRPGLR+Y NY++IPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NVDMNRKGTVRIESTNMAEKIVKILLREGFIENVRKHQENKKSFLVLTLRHRRNRKGPSPSRTFLNLNLKRISRPGLRVYSNYQKIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 138          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_LOTJA (30S ribosomal protein S8, chloroplastic OS=Lotus japonicus GN=rps8 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.208e-48
Identity = 95/120 (79.17%), Postives = 104/120 (86.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRK TV+I  TNITEN VKILLREGFIEN RK  E+ K FLVLTLR+RRN KG Y+  LNLKRIS PGLRIY+NY++IPRIL GMGIVILSTSRGIMTDR ARLE+IGGE+LCYIW
Sbjct:   15 NADMNRKRTVQIPFTNITENTVKILLREGFIENVRKHRESDKSFLVLTLRYRRNTKGSYKTFLNLKRISTPGLRIYYNYQKIPRILGGMGIVILSTSRGIMTDREARLEKIGGEVLCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CALFG (30S ribosomal protein S8, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps8 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.208e-48
Identity = 99/120 (82.50%), Postives = 106/120 (88.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+M++KGTVRIASTNITEN+VKILLREGFIEN RK  EN K FLV TL+HRRNRKG YR IL  KRISRPGLRIY NY+RIPRIL GMGIVILSTS+GIMTDR ARLE IGGEILCYIW
Sbjct:   15 NANMDKKGTVRIASTNITENIVKILLREGFIENVRKHQENNKYFLVSTLQHRRNRKGRYRTIL--KRISRPGLRIYSNYQRIPRILGGMGIVILSTSQGIMTDREARLEGIGGEILCYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_LIRTU (30S ribosomal protein S8, chloroplastic OS=Liriodendron tulipifera GN=rps8 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.072e-47
Identity = 99/120 (82.50%), Postives = 105/120 (87.50%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM++KGTVRIASTN+ E+VVKILLREGFIEN RK  EN K FLV TLRHRRNRKG YR IL  KRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGE+LCYIW
Sbjct:   15 NADMDKKGTVRIASTNMAESVVKILLREGFIENVRKHRENNKYFLVSTLRHRRNRKGTYRNIL--KRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEVLCYIW 132          
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_ARATH9.696e-4980.8330S ribosomal protein S8, chloroplastic OS=Arabido... [more]
RR8_ARAHI1.266e-4880.8330S ribosomal protein S8, chloroplastic OS=Arabis ... [more]
RR8_OLIPU3.684e-4880.0030S ribosomal protein S8, chloroplastic OS=Olimara... [more]
RR8_LOBMA3.684e-4880.0030S ribosomal protein S8, chloroplastic OS=Lobular... [more]
RR8_CAPBU3.684e-4880.0030S ribosomal protein S8, chloroplastic OS=Capsell... [more]
RR8_AETGR4.812e-4879.1730S ribosomal protein S8, chloroplastic OS=Aethion... [more]
RR8_OENEH6.285e-4879.8430S ribosomal protein S8, chloroplastic OS=Oenothe... [more]
RR8_LOTJA8.208e-4879.1730S ribosomal protein S8, chloroplastic OS=Lotus j... [more]
RR8_CALFG8.208e-4882.5030S ribosomal protein S8, chloroplastic OS=Calycan... [more]
RR8_LIRTU1.072e-4782.5030S ribosomal protein S8, chloroplastic OS=Liriode... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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