CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_DRIGR (30S ribosomal protein S8, chloroplastic OS=Drimys granadensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.119e-47
Identity = 97/120 (80.83%), Postives = 105/120 (87.50%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM++KGTVRIASTNITEN++KILLREGFIEN RK  EN K  L+LTLRHRRNRKG YR I  LK ISRPGLRIY NY+RIPRIL G+GIVILSTSRGIMTDR ARL+ IGGEILCYIW
Sbjct:   15 NADMDKKGTVRIASTNITENIIKILLREGFIENVRKHRENNKYLLILTLRHRRNRKGTYRNI--LKCISRPGLRIYSNYKRIPRILGGIGIVILSTSRGIMTDREARLKGIGGEILCYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PHAVU (30S ribosomal protein S8, chloroplastic OS=Phaseolus vulgaris GN=rps8 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.948e-47
Identity = 91/120 (75.83%), Postives = 104/120 (86.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NAD+N+KG V++  TNITE +VKILLREGF+EN RK  EN K FLVLTLR+RRNRK  Y+  LNLKRIS PGLRIY+NY++IPRIL GMGIVILSTSRGIMTDR ARLE+IGGE+LCYIW
Sbjct:   15 NADINKKGMVQLPFTNITEKIVKILLREGFVENIRKHRENDKSFLVLTLRYRRNRKESYKSFLNLKRISTPGLRIYYNYKKIPRILGGMGIVILSTSRGIMTDREARLEKIGGEVLCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_LEPVR (30S ribosomal protein S8, chloroplastic OS=Lepidium virginicum GN=rps8 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.948e-47
Identity = 94/120 (78.33%), Postives = 105/120 (87.50%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKGTVRI STNITE++VKILLREGFIEN RK  EN + FL+LTLRH+RN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR AR + IGGEILCYIW
Sbjct:   15 NADMNRKGTVRIRSTNITESIVKILLREGFIENVRKHRENNQYFLILTLRHKRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARRKSIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_MORIN (30S ribosomal protein S8, chloroplastic OS=Morus indica GN=rps8 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.075e-47
Identity = 97/122 (79.51%), Postives = 104/122 (85.25%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRR--NRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+K TVRI  TNITEN++KILLREGFIEN RK  E+   F VLTLRHRR  NRKGP + +LNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMNKKRTVRIPYTNITENILKILLREGFIENMRKHQESNNLFFVLTLRHRRKRNRKGPDKTVLNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 136          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_DRANE (30S ribosomal protein S8, chloroplastic OS=Draba nemorosa GN=rps8 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.075e-47
Identity = 93/120 (77.50%), Postives = 104/120 (86.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMNRKG VRI STNITE++VKILLREGF+EN RK  EN   FL+LTLRHRRN+K  Y+  LNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL++IGGEILCYIW
Sbjct:   15 NADMNRKGMVRIESTNITESIVKILLREGFVENVRKHRENNHYFLILTLRHRRNKKESYKTFLNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKKIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CHLSC (30S ribosomal protein S8, chloroplastic OS=Chloranthus spicatus GN=rps8 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 100/122 (81.97%), Postives = 105/122 (86.07%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNI--TENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM +KGTVRIASTNI  +EN+V+ILLREGFIEN RK  EN K FLV TLRHRRNRKG YR IL  KRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMEKKGTVRIASTNINISENIVQILLREGFIENVRKHRENNKYFLVSTLRHRRNRKGAYRNIL--KRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ILLOL (30S ribosomal protein S8, chloroplastic OS=Illicium oligandrum GN=rps8 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.548e-46
Identity = 98/120 (81.67%), Postives = 102/120 (85.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM  KG VRIASTNITEN+VKILLREGFIEN RK  E+ K FLV TLRHRRNRKG YR IL  KRISRPGLRIY NY+ IPRIL GMG+VILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMGTKGMVRIASTNITENIVKILLREGFIENVRKHRESNKYFLVSTLRHRRNRKGTYRNIL--KRISRPGLRIYSNYQGIPRILGGMGVVILSTSRGIMTDREARLEGIGGEILCYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_DIOEL (30S ribosomal protein S8, chloroplastic OS=Dioscorea elephantipes GN=rps8 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.640e-46
Identity = 95/120 (79.17%), Postives = 106/120 (88.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM++KGTVRIASTNITEN+VKILLREGFIEN RK  EN++ FLV TLRHRR  KG YR IL  KRISRPGLRIY NY+RIP+IL G+GIVILSTS+GIMTDR ARL++IGGEILCYIW
Sbjct:   15 NADMDKKGTVRIASTNITENIVKILLREGFIENVRKHQENQRFFLVSTLRHRRTSKGVYRTIL--KRISRPGLRIYSNYQRIPKILGGIGIVILSTSQGIMTDREARLKKIGGEILCYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_NYMAL (30S ribosomal protein S8, chloroplastic OS=Nymphaea alba GN=rps8 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.504e-46
Identity = 97/120 (80.83%), Postives = 104/120 (86.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM++KGTVRI STNITEN+VKILLREGFIEN RK  EN K+FLVLTLRHRRNRK  YR I  LKRISRPGLRIY N +RIPRI  G+G+VILSTSRGIMTDR ARLERIGGEIL YIW
Sbjct:   15 NADMDKKGTVRIPSTNITENIVKILLREGFIENVRKHRENNKDFLVLTLRHRRNRKRAYRNI--LKRISRPGLRIYSNSQRIPRISGGIGVVILSTSRGIMTDREARLERIGGEILFYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PHAAN (30S ribosomal protein S8, chloroplastic OS=Phaseolus angularis GN=rps8 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.682e-46
Identity = 91/120 (75.83%), Postives = 103/120 (85.83%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KG V++  TNITE +VKILLREGF+EN RK  EN K FLVLTLR+RRNRK   +  LNLKRIS PGLRIY+NY++IPRIL GMGIVILSTSRGIMTDR ARLE+IGGE+LCYIW
Sbjct:   15 NADMNKKGMVQLPFTNITEKIVKILLREGFVENIRKHRENNKYFLVLTLRYRRNRKESSKNFLNLKRISTPGLRIYYNYQQIPRILGGMGIVILSTSRGIMTDREARLEKIGGEVLCYIW 134          
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_DRIGR3.119e-4780.8330S ribosomal protein S8, chloroplastic OS=Drimys ... [more]
RR8_PHAVU6.948e-4775.8330S ribosomal protein S8, chloroplastic OS=Phaseol... [more]
RR8_LEPVR6.948e-4778.3330S ribosomal protein S8, chloroplastic OS=Lepidiu... [more]
RR8_MORIN9.075e-4779.5130S ribosomal protein S8, chloroplastic OS=Morus i... [more]
RR8_DRANE9.075e-4777.5030S ribosomal protein S8, chloroplastic OS=Draba n... [more]
RR8_CHLSC1.185e-4681.9730S ribosomal protein S8, chloroplastic OS=Chloran... [more]
RR8_ILLOL1.548e-4681.6730S ribosomal protein S8, chloroplastic OS=Illiciu... [more]
RR8_DIOEL2.640e-4679.1730S ribosomal protein S8, chloroplastic OS=Dioscor... [more]
RR8_NYMAL4.504e-4680.8330S ribosomal protein S8, chloroplastic OS=Nymphae... [more]
RR8_PHAAN7.682e-4675.8330S ribosomal protein S8, chloroplastic OS=Phaseol... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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