CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SHIF8 (30S ribosomal protein S8 OS=Shigella flexneri serotype 5b (strain 8401) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SHIDS (30S ribosomal protein S8 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SHIBS (30S ribosomal protein S8 OS=Shigella boydii serotype 4 (strain Sb227) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SHIB3 (30S ribosomal protein S8 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SALTY (30S ribosomal protein S8 OS=Salmonella typhimurium GN=rpsH PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SALTI (30S ribosomal protein S8 OS=Salmonella typhi GN=rpsH PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SALSV (30S ribosomal protein S8 OS=Salmonella schwarzengrund (strain CVM19633) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SALPK (30S ribosomal protein S8 OS=Salmonella paratyphi A (strain AKU_12601) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SALPB (30S ribosomal protein S8 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SALPA (30S ribosomal protein S8 OS=Salmonella paratyphi A GN=rpsH PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS8_SHIF81.972e-1738.6630S ribosomal protein S8 OS=Shigella flexneri sero... [more]
RS8_SHIDS1.972e-1738.6630S ribosomal protein S8 OS=Shigella dysenteriae s... [more]
RS8_SHIBS1.972e-1738.6630S ribosomal protein S8 OS=Shigella boydii seroty... [more]
RS8_SHIB31.972e-1738.6630S ribosomal protein S8 OS=Shigella boydii seroty... [more]
RS8_SALTY1.972e-1738.6630S ribosomal protein S8 OS=Salmonella typhimurium... [more]
RS8_SALTI1.972e-1738.6630S ribosomal protein S8 OS=Salmonella typhi GN=rp... [more]
RS8_SALSV1.972e-1738.6630S ribosomal protein S8 OS=Salmonella schwarzengr... [more]
RS8_SALPK1.972e-1738.6630S ribosomal protein S8 OS=Salmonella paratyphi A... [more]
RS8_SALPB1.972e-1738.6630S ribosomal protein S8 OS=Salmonella paratyphi B... [more]
RS8_SALPA1.972e-1738.6630S ribosomal protein S8 OS=Salmonella paratyphi A... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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