CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ECO7I (30S ribosomal protein S8 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ECO5E (30S ribosomal protein S8 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ECO57 (30S ribosomal protein S8 OS=Escherichia coli O157:H7 GN=rpsH PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ECO55 (30S ribosomal protein S8 OS=Escherichia coli (strain 55989 / EAEC) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ECO45 (30S ribosomal protein S8 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ECO27 (30S ribosomal protein S8 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ECO24 (30S ribosomal protein S8 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_CITK8 (30S ribosomal protein S8 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rpsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_RHOSR (30S ribosomal protein S8 OS=Rhodococcus sp. (strain RHA1) GN=rpsH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 42/120 (35.00%), Postives = 75/120 (62.50%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+      V++  + I  N+ +IL REG+I + R       + L++ L++  +R+   R +  ++R+S+PGLR+Y     +P++L G+G+ I+STS G++TDR A  + +GGE+L Y+W
Sbjct:   16 NANTAYHDEVKLPHSKIKANIAEILKREGYIADYRTEDAEVGKTLIVDLKYGPSRE---RSLAGVRRVSKPGLRVYAKSTNLPKVLGGLGVAIISTSTGLLTDRQAANQGVGGEVLAYVW 132
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_RHOOB (30S ribosomal protein S8 OS=Rhodococcus opacus (strain B4) GN=rpsH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 42/120 (35.00%), Postives = 75/120 (62.50%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+      V++  + I  N+ +IL REG+I + R       + L++ L++  +R+   R +  ++R+S+PGLR+Y     +P++L G+G+ I+STS G++TDR A  + +GGE+L Y+W
Sbjct:   16 NANTAYHDEVKLPHSKIKANIAEILKREGYIADYRTEDAEVGKTLIVDLKYGPSRE---RSLAGVRRVSKPGLRVYAKSTNLPKVLGGLGVAIISTSTGLLTDRQAANQGVGGEVLAYVW 132
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS8_ECO7I1.972e-1738.6630S ribosomal protein S8 OS=Escherichia coli O7:K1... [more]
RS8_ECO5E1.972e-1738.6630S ribosomal protein S8 OS=Escherichia coli O157:... [more]
RS8_ECO571.972e-1738.6630S ribosomal protein S8 OS=Escherichia coli O157:... [more]
RS8_ECO551.972e-1738.6630S ribosomal protein S8 OS=Escherichia coli (stra... [more]
RS8_ECO451.972e-1738.6630S ribosomal protein S8 OS=Escherichia coli O45:K... [more]
RS8_ECO271.972e-1738.6630S ribosomal protein S8 OS=Escherichia coli O127:... [more]
RS8_ECO241.972e-1738.6630S ribosomal protein S8 OS=Escherichia coli O139:... [more]
RS8_CITK81.972e-1738.6630S ribosomal protein S8 OS=Citrobacter koseri (st... [more]
RS8_RHOSR2.575e-1735.0030S ribosomal protein S8 OS=Rhodococcus sp. (strai... [more]
RS8_RHOOB2.575e-1735.0030S ribosomal protein S8 OS=Rhodococcus opacus (st... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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