CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_BUCAT (30S ribosomal protein S8 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rpsH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17
Identity = 42/119 (35.29%), Postives = 78/119 (65.55%), Query Frame = -2
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N  +  K +V++ S+ + ++++++L  EG+I++     + K E  V  L++ + +      +  ++RISRP LRIY N   +P+++ G+GI ++STS+G+MTDR AR E +GGE++CY+
Sbjct:   16 NGQLANKYSVKMPSSKLKKSIIQLLKEEGYIKDYNVTGDTKLELEVF-LKYFQGKS----VVDMIQRISRPSLRIYKNKNNLPKVMSGLGIAVISTSKGVMTDRMARQEGLGGEVICYV 129          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_BUCAI (30S ribosomal protein S8 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpsH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17
Identity = 42/119 (35.29%), Postives = 78/119 (65.55%), Query Frame = -2
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N  +  K +V++ S+ + ++++++L  EG+I++     + K E  V  L++ + +      +  ++RISRP LRIY N   +P+++ G+GI ++STS+G+MTDR AR E +GGE++CY+
Sbjct:   16 NGQLANKYSVKMPSSKLKKSIIQLLKEEGYIKDYNVTGDTKLELEVF-LKYFQGKS----VVDMIQRISRPSLRIYKNKNNLPKVMSGLGIAVISTSKGVMTDRMARQEGLGGEVICYV 129          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_BUCA5 (30S ribosomal protein S8 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rpsH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17
Identity = 42/119 (35.29%), Postives = 78/119 (65.55%), Query Frame = -2
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N  +  K +V++ S+ + ++++++L  EG+I++     + K E  V  L++ + +      +  ++RISRP LRIY N   +P+++ G+GI ++STS+G+MTDR AR E +GGE++CY+
Sbjct:   16 NGQLANKYSVKMPSSKLKKSIIQLLKEEGYIKDYNVTGDTKLELEVF-LKYFQGKS----VVDMIQRISRPSLRIYKNKNNLPKVMSGLGIAVISTSKGVMTDRMARQEGLGGEVICYV 129          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ACIBL (30S ribosomal protein S8 OS=Acidobacteria bacterium (strain Ellin345) GN=rpsH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17
Identity = 47/120 (39.17%), Postives = 72/120 (60.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA   R   V   ++ +   + +IL  EG+I N + + E  K+ + + L++  +   P   I N+ RISRPG R+Y   + IPR+L G+GI IL+T +G+MT R AR E +GGE+LC I+
Sbjct:   17 NAIKARHQKVDAPASKLKTELARILKEEGYIANYKAVEEEGKKLIRVYLKYGSDNVSP---ISNVTRISRPGCRVYVGSKEIPRVLGGLGISILTTPKGVMTGRQARKEGVGGEVLCEIY 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_NOCSJ (30S ribosomal protein S8 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rpsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 45/123 (36.59%), Postives = 76/123 (61.79%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEF---LVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+      V +  + + + V  IL +EG+I +       + E    L +TL++ RNR+   R I  ++RIS+PGLR+Y  +  +P++L G+G+ I+STS+G++TDR A  + +GGE+L Y+W
Sbjct:   16 NANQAYHDAVSMPYSKLKQGVADILKQEGYITSYDVTEPAEGEVGKTLTITLKYGRNRE---RSIAGVRRISKPGLRVYAKHTGLPKVLGGLGVAIISTSQGLLTDRQANQKGVGGEVLAYVW 135          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_NITEU (30S ribosomal protein S8 OS=Nitrosomonas europaea GN=rpsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/119 (34.45%), Postives = 77/119 (64.71%), Query Frame = -2
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            NA    +  +++ S+ + + ++KIL  EG+IEN ++   +KK  + + L++          I ++ R+S+PGLR Y +   +PR+++G+G+ I+STS+G+MT+R AR+  +GGE+LC +
Sbjct:   16 NAQSAEQKEIKMPSSKLKKAILKILKEEGYIENFQEDPNHKKPSISVILKYFNGEP----VITSISRVSKPGLRSYKSKNDLPRVMNGLGVAIVSTSKGVMTERTARMAGVGGELLCVV 130          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_KLEP3 (30S ribosomal protein S8 OS=Klebsiella pneumoniae (strain 342) GN=rpsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            N     K  V + S+ +   +  +L  EGFIE+ +   + K E L LTL++ + +      + +++R+SRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDIKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_DEIGD (30S ribosomal protein S8 OS=Deinococcus geothermalis (strain DSM 11300) GN=rpsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 43/122 (35.25%), Postives = 78/122 (63.93%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVL--TLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA    K +V I ++   E + K+L+REG++    +L    ++F VL  TL++ + R+   + I +++R+SRPG R Y +   +PR+  G+G+ ++STS+G++ DR AR + +GGE++C +W
Sbjct:   15 NATRAYKESVDIPASKFKEELAKLLVREGYVAGVERLRPEGQKFDVLRITLKYGQKRE---QVIKHIERVSRPGRRAYVSAENLPRVQRGLGLAVVSTSKGLLPDREARKQGVGGEVVCILW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_BURVG (30S ribosomal protein S8 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 43/120 (35.83%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            NA M  K +V + S+ +   + ++L  EG+I++     E  K  L + L++   R     P++  L+R+S+PGLR+Y     IP++++G+G+ I+ST +G+MTDR AR   +GGE++CY+
Sbjct:   16 NAQMVEKVSVAMPSSKVKVAIAQVLKDEGYIDDFAVKAEGAKSELNIALKYYAGR-----PVIERLERVSKPGLRVYRGRNDIPQVMNGLGVAIVSTPKGVMTDRKARATGVGGEVICYV 130          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_BURP8 (30S ribosomal protein S8 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rpsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 43/120 (35.83%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            NA M  K +V + S+ +   + ++L  EG+I++     E  K  L + L++   R     P++  L+R+S+PGLR+Y     IP++++G+G+ I+ST +G+MTDR AR   +GGE++CY+
Sbjct:   16 NAQMVEKVSVTMPSSKVKVAIAQVLKDEGYIDDFAVKAEGAKSELNIALKYYAGR-----PVIERLERVSKPGLRVYRGRNDIPQVMNGLGVAIVSTPKGVMTDRKARATGVGGEVICYV 130          
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS8_BUCAT3.363e-1735.2930S ribosomal protein S8 OS=Buchnera aphidicola su... [more]
RS8_BUCAI3.363e-1735.2930S ribosomal protein S8 OS=Buchnera aphidicola su... [more]
RS8_BUCA53.363e-1735.2930S ribosomal protein S8 OS=Buchnera aphidicola su... [more]
RS8_ACIBL3.363e-1739.1730S ribosomal protein S8 OS=Acidobacteria bacteriu... [more]
RS8_NOCSJ4.393e-1736.5930S ribosomal protein S8 OS=Nocardioides sp. (stra... [more]
RS8_NITEU4.393e-1734.4530S ribosomal protein S8 OS=Nitrosomonas europaea ... [more]
RS8_KLEP34.393e-1738.6630S ribosomal protein S8 OS=Klebsiella pneumoniae ... [more]
RS8_DEIGD4.393e-1735.2530S ribosomal protein S8 OS=Deinococcus geothermal... [more]
RS8_BURVG4.393e-1735.8330S ribosomal protein S8 OS=Burkholderia vietnamie... [more]
RS8_BURP84.393e-1735.8330S ribosomal protein S8 OS=Burkholderia phymatum ... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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