CX295334
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_BUCAT (30S ribosomal protein S8 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rpsH PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17 Identity = 42/119 (35.29%), Postives = 78/119 (65.55%), Query Frame = -2 Query: 327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683 N + K +V++ S+ + ++++++L EG+I++ + K E V L++ + + + ++RISRP LRIY N +P+++ G+GI ++STS+G+MTDR AR E +GGE++CY+ Sbjct: 16 NGQLANKYSVKMPSSKLKKSIIQLLKEEGYIKDYNVTGDTKLELEVF-LKYFQGKS----VVDMIQRISRPSLRIYKNKNNLPKVMSGLGIAVISTSKGVMTDRMARQEGLGGEVICYV 129
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_BUCAI (30S ribosomal protein S8 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpsH PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17 Identity = 42/119 (35.29%), Postives = 78/119 (65.55%), Query Frame = -2 Query: 327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683 N + K +V++ S+ + ++++++L EG+I++ + K E V L++ + + + ++RISRP LRIY N +P+++ G+GI ++STS+G+MTDR AR E +GGE++CY+ Sbjct: 16 NGQLANKYSVKMPSSKLKKSIIQLLKEEGYIKDYNVTGDTKLELEVF-LKYFQGKS----VVDMIQRISRPSLRIYKNKNNLPKVMSGLGIAVISTSKGVMTDRMARQEGLGGEVICYV 129
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_BUCA5 (30S ribosomal protein S8 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rpsH PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17 Identity = 42/119 (35.29%), Postives = 78/119 (65.55%), Query Frame = -2 Query: 327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683 N + K +V++ S+ + ++++++L EG+I++ + K E V L++ + + + ++RISRP LRIY N +P+++ G+GI ++STS+G+MTDR AR E +GGE++CY+ Sbjct: 16 NGQLANKYSVKMPSSKLKKSIIQLLKEEGYIKDYNVTGDTKLELEVF-LKYFQGKS----VVDMIQRISRPSLRIYKNKNNLPKVMSGLGIAVISTSKGVMTDRMARQEGLGGEVICYV 129
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_ACIBL (30S ribosomal protein S8 OS=Acidobacteria bacterium (strain Ellin345) GN=rpsH PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17 Identity = 47/120 (39.17%), Postives = 72/120 (60.00%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA R V ++ + + +IL EG+I N + + E K+ + + L++ + P I N+ RISRPG R+Y + IPR+L G+GI IL+T +G+MT R AR E +GGE+LC I+ Sbjct: 17 NAIKARHQKVDAPASKLKTELARILKEEGYIANYKAVEEEGKKLIRVYLKYGSDNVSP---ISNVTRISRPGCRVYVGSKEIPRVLGGLGISILTTPKGVMTGRQARKEGVGGEVLCEIY 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_NOCSJ (30S ribosomal protein S8 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rpsH PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17 Identity = 45/123 (36.59%), Postives = 76/123 (61.79%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEF---LVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+ V + + + + V IL +EG+I + + E L +TL++ RNR+ R I ++RIS+PGLR+Y + +P++L G+G+ I+STS+G++TDR A + +GGE+L Y+W Sbjct: 16 NANQAYHDAVSMPYSKLKQGVADILKQEGYITSYDVTEPAEGEVGKTLTITLKYGRNRE---RSIAGVRRISKPGLRVYAKHTGLPKVLGGLGVAIISTSQGLLTDRQANQKGVGGEVLAYVW 135
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_NITEU (30S ribosomal protein S8 OS=Nitrosomonas europaea GN=rpsH PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17 Identity = 41/119 (34.45%), Postives = 77/119 (64.71%), Query Frame = -2 Query: 327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683 NA + +++ S+ + + ++KIL EG+IEN ++ +KK + + L++ I ++ R+S+PGLR Y + +PR+++G+G+ I+STS+G+MT+R AR+ +GGE+LC + Sbjct: 16 NAQSAEQKEIKMPSSKLKKAILKILKEEGYIENFQEDPNHKKPSISVILKYFNGEP----VITSISRVSKPGLRSYKSKNDLPRVMNGLGVAIVSTSKGVMTERTARMAGVGGELLCVV 130
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_KLEP3 (30S ribosomal protein S8 OS=Klebsiella pneumoniae (strain 342) GN=rpsH PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17 Identity = 46/119 (38.66%), Postives = 75/119 (63.03%), Query Frame = -2 Query: 327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683 N K V + S+ + + +L EGFIE+ + + K E L LTL++ + + + +++R+SRPGLRIY +P+++ G+GI ++STS+G+MTDRAAR +GGEI+CY+ Sbjct: 16 NGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDIKPE-LELTLKYFQGKA----VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 129
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_DEIGD (30S ribosomal protein S8 OS=Deinococcus geothermalis (strain DSM 11300) GN=rpsH PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17 Identity = 43/122 (35.25%), Postives = 78/122 (63.93%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVL--TLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA K +V I ++ E + K+L+REG++ +L ++F VL TL++ + R+ + I +++R+SRPG R Y + +PR+ G+G+ ++STS+G++ DR AR + +GGE++C +W Sbjct: 15 NATRAYKESVDIPASKFKEELAKLLVREGYVAGVERLRPEGQKFDVLRITLKYGQKRE---QVIKHIERVSRPGRRAYVSAENLPRVQRGLGLAVVSTSKGLLPDREARKQGVGGEVVCILW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_BURVG (30S ribosomal protein S8 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsH PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17 Identity = 43/120 (35.83%), Postives = 75/120 (62.50%), Query Frame = -2 Query: 327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683 NA M K +V + S+ + + ++L EG+I++ E K L + L++ R P++ L+R+S+PGLR+Y IP++++G+G+ I+ST +G+MTDR AR +GGE++CY+ Sbjct: 16 NAQMVEKVSVAMPSSKVKVAIAQVLKDEGYIDDFAVKAEGAKSELNIALKYYAGR-----PVIERLERVSKPGLRVYRGRNDIPQVMNGLGVAIVSTPKGVMTDRKARATGVGGEVICYV 130
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_BURP8 (30S ribosomal protein S8 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rpsH PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17 Identity = 43/120 (35.83%), Postives = 75/120 (62.50%), Query Frame = -2 Query: 327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683 NA M K +V + S+ + + ++L EG+I++ E K L + L++ R P++ L+R+S+PGLR+Y IP++++G+G+ I+ST +G+MTDR AR +GGE++CY+ Sbjct: 16 NAQMVEKVSVTMPSSKVKVAIAQVLKDEGYIDDFAVKAEGAKSELNIALKYYAGR-----PVIERLERVSKPGLRVYRGRNDIPQVMNGLGVAIVSTPKGVMTDRKARATGVGGEVICYV 130 The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bpback to top |