CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PLAOC (30S ribosomal protein S8, chloroplastic OS=Platanus occidentalis GN=rps8 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.235e-45
Identity = 94/120 (78.33%), Postives = 102/120 (85.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM++KG VRI  TNI EN++KILLREGFIEN RK  E+ K FLV TLRHRRNRK PY+ IL  KRISRPGLRIY NY+RIPRIL G+GIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:   15 NADMDKKGRVRIGYTNIAENIIKILLREGFIENVRKHRESNKYFLVSTLRHRRNRKRPYKTIL--KRISRPGLRIYSNYQRIPRILGGIGIVILSTSRGIMTDREARLEGIGGEILCYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PELHO (30S ribosomal protein S8, chloroplastic OS=Pelargonium hortorum GN=rps8 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.235e-45
Identity = 90/120 (75.00%), Postives = 103/120 (85.83%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM +K TVRI  TNI +N+V ILLREGFI+NAR+  E+KK FLVLTLRHRRNRKGP R + NLKR+SRPGLRIY NY++IPRIL GMG+ ILSTS+GIMTDR ARL+RIGGEIL YIW
Sbjct:   15 NADMAKKETVRITFTNIAQNIVTILLREGFIKNAREHRESKKSFLVLTLRHRRNRKGPSRTLFNLKRVSRPGLRIYSNYQKIPRILGGMGVAILSTSKGIMTDREARLKRIGGEILLYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CUSRE (30S ribosomal protein S8, plastid OS=Cuscuta reflexa GN=rps8 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.109e-44
Identity = 90/120 (75.00%), Postives = 101/120 (84.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RK  VRIAST+ITEN+VK+LLREGF EN RK  EN K F VLTLRHRRN+K P R IL LKRISRPGLRIY+  ++IPRIL GMG++I+STSRGIMTDR ARLE IGGEIL YIW
Sbjct:   15 NADMDRKRVVRIASTHITENIVKLLLREGFFENVRKHRENNKNFFVLTLRHRRNKKRPLRNILKLKRISRPGLRIYYKSQKIPRILGGMGVIIISTSRGIMTDREARLEGIGGEILFYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_AMBTC (30S ribosomal protein S8, chloroplastic OS=Amborella trichopoda GN=rps8 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.109e-44
Identity = 93/120 (77.50%), Postives = 101/120 (84.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM++K  VRIASTNITEN+VKI+L+EGFIEN RK  EN K FLVLTLRH+RNRKG YR    LKRISR GLRIY NY+RIPRI  GMG+VILSTSRGIMTDR AR E IGGEILCYIW
Sbjct:   15 NADMDKKRMVRIASTNITENIVKIILQEGFIENVRKHRENNKNFLVLTLRHKRNRKGTYRK--TLKRISRSGLRIYSNYQRIPRISGGMGVVILSTSRGIMTDREARREGIGGEILCYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SACHY (30S ribosomal protein S8, chloroplastic OS=Saccharum hybrid GN=rps8 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.892e-44
Identity = 91/122 (74.59%), Postives = 102/122 (83.61%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK  E+ + FLVLTLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:   15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVLTLRHQRRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CUSEX (30S ribosomal protein S8, plastid OS=Cuscuta exaltata GN=rps8 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.892e-44
Identity = 91/120 (75.83%), Postives = 100/120 (83.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM+RK  VRIAST+ITEN+VK+LLREGF EN RK  EN K F VLTLRHRRN+K P R IL LKRISRPGLRIY+  +RIPRIL G G+VI+STSRGIMTDR ARLE IGGEIL YIW
Sbjct:   15 NADMDRKRVVRIASTHITENIVKLLLREGFFENVRKHRENNKNFFVLTLRHRRNKKRPLRNILKLKRISRPGLRIYYKSQRIPRILGGRGVVIISTSRGIMTDREARLEGIGGEILFYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CERDE (30S ribosomal protein S8, chloroplastic OS=Ceratophyllum demersum GN=rps8 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.228e-44
Identity = 95/120 (79.17%), Postives = 100/120 (83.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+K TVRI STNI E++V+ILLREGFIEN RK  EN K FLV TLRHRRNR G YR IL  KRISRPGLRIY N +RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILC IW
Sbjct:   15 NADMNKKETVRIPSTNIIESIVRILLREGFIENVRKHQENNKNFLVSTLRHRRNRTGTYRNIL--KRISRPGLRIYSNSQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCSIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ACOCL (30S ribosomal protein S8, chloroplastic OS=Acorus calamus GN=rps8 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.190e-44
Identity = 93/119 (78.15%), Postives = 103/119 (86.55%), Query Frame = -2
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            NA M +KGTVRIASTN+TENVVKILLREGFIEN RK  E+ K+FLVLTLRHRR RKG YR I  LKRISRPGLRIY NY+ IP+IL G+GIVI+STSRGIMTDR ARL+ IGGE+LCYI
Sbjct:   15 NAQMAKKGTVRIASTNLTENVVKILLREGFIENVRKHRESNKDFLVLTLRHRRTRKGIYRTI--LKRISRPGLRIYSNYQGIPKILGGIGIVIVSTSRGIMTDREARLQGIGGEMLCYI 131          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SORBI (30S ribosomal protein S8, chloroplastic OS=Sorghum bicolor GN=rps8 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 90/122 (73.77%), Postives = 101/122 (82.79%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK  E+ + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:   15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQRRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SACOF (30S ribosomal protein S8, chloroplastic OS=Saccharum officinarum GN=rps8 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 90/122 (73.77%), Postives = 101/122 (82.79%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK  E+ + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:   15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQRRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136          
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_PLAOC2.235e-4578.3330S ribosomal protein S8, chloroplastic OS=Platanu... [more]
RR8_PELHO2.235e-4575.0030S ribosomal protein S8, chloroplastic OS=Pelargo... [more]
RR8_CUSRE1.109e-4475.0030S ribosomal protein S8, plastid OS=Cuscuta refle... [more]
RR8_AMBTC1.109e-4477.5030S ribosomal protein S8, chloroplastic OS=Amborel... [more]
RR8_SACHY1.892e-4474.5930S ribosomal protein S8, chloroplastic OS=Sacchar... [more]
RR8_CUSEX1.892e-4475.8330S ribosomal protein S8, plastid OS=Cuscuta exalt... [more]
RR8_CERDE3.228e-4479.1730S ribosomal protein S8, chloroplastic OS=Ceratop... [more]
RR8_ACOCL7.190e-4478.1530S ribosomal protein S8, chloroplastic OS=Acorus ... [more]
RR8_SORBI9.391e-4473.7730S ribosomal protein S8, chloroplastic OS=Sorghum... [more]
RR8_SACOF9.391e-4473.7730S ribosomal protein S8, chloroplastic OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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