CX295334
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PLAOC (30S ribosomal protein S8, chloroplastic OS=Platanus occidentalis GN=rps8 PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 2.235e-45 Identity = 94/120 (78.33%), Postives = 102/120 (85.00%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NADM++KG VRI TNI EN++KILLREGFIEN RK E+ K FLV TLRHRRNRK PY+ IL KRISRPGLRIY NY+RIPRIL G+GIVILSTSRGIMTDR ARLE IGGEILCYIW Sbjct: 15 NADMDKKGRVRIGYTNIAENIIKILLREGFIENVRKHRESNKYFLVSTLRHRRNRKRPYKTIL--KRISRPGLRIYSNYQRIPRILGGIGIVILSTSRGIMTDREARLEGIGGEILCYIW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PELHO (30S ribosomal protein S8, chloroplastic OS=Pelargonium hortorum GN=rps8 PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 2.235e-45 Identity = 90/120 (75.00%), Postives = 103/120 (85.83%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NADM +K TVRI TNI +N+V ILLREGFI+NAR+ E+KK FLVLTLRHRRNRKGP R + NLKR+SRPGLRIY NY++IPRIL GMG+ ILSTS+GIMTDR ARL+RIGGEIL YIW Sbjct: 15 NADMAKKETVRITFTNIAQNIVTILLREGFIKNAREHRESKKSFLVLTLRHRRNRKGPSRTLFNLKRVSRPGLRIYSNYQKIPRILGGMGVAILSTSKGIMTDREARLKRIGGEILLYIW 134
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CUSRE (30S ribosomal protein S8, plastid OS=Cuscuta reflexa GN=rps8 PE=3 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.109e-44 Identity = 90/120 (75.00%), Postives = 101/120 (84.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NADM+RK VRIAST+ITEN+VK+LLREGF EN RK EN K F VLTLRHRRN+K P R IL LKRISRPGLRIY+ ++IPRIL GMG++I+STSRGIMTDR ARLE IGGEIL YIW Sbjct: 15 NADMDRKRVVRIASTHITENIVKLLLREGFFENVRKHRENNKNFFVLTLRHRRNKKRPLRNILKLKRISRPGLRIYYKSQKIPRILGGMGVIIISTSRGIMTDREARLEGIGGEILFYIW 134
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_AMBTC (30S ribosomal protein S8, chloroplastic OS=Amborella trichopoda GN=rps8 PE=3 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.109e-44 Identity = 93/120 (77.50%), Postives = 101/120 (84.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NADM++K VRIASTNITEN+VKI+L+EGFIEN RK EN K FLVLTLRH+RNRKG YR LKRISR GLRIY NY+RIPRI GMG+VILSTSRGIMTDR AR E IGGEILCYIW Sbjct: 15 NADMDKKRMVRIASTNITENIVKIILQEGFIENVRKHRENNKNFLVLTLRHKRNRKGTYRK--TLKRISRSGLRIYSNYQRIPRISGGMGVVILSTSRGIMTDREARREGIGGEILCYIW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SACHY (30S ribosomal protein S8, chloroplastic OS=Saccharum hybrid GN=rps8 PE=2 SV=2) HSP 1 Score: 179.104 bits (453), Expect = 1.892e-44 Identity = 91/122 (74.59%), Postives = 102/122 (83.61%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK E+ + FLVLTLRH R+ RKG YR LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW Sbjct: 15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVLTLRHQRRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CUSEX (30S ribosomal protein S8, plastid OS=Cuscuta exaltata GN=rps8 PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.892e-44 Identity = 91/120 (75.83%), Postives = 100/120 (83.33%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NADM+RK VRIAST+ITEN+VK+LLREGF EN RK EN K F VLTLRHRRN+K P R IL LKRISRPGLRIY+ +RIPRIL G G+VI+STSRGIMTDR ARLE IGGEIL YIW Sbjct: 15 NADMDRKRVVRIASTHITENIVKLLLREGFFENVRKHRENNKNFFVLTLRHRRNKKRPLRNILKLKRISRPGLRIYYKSQRIPRILGGRGVVIISTSRGIMTDREARLEGIGGEILFYIW 134
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CERDE (30S ribosomal protein S8, chloroplastic OS=Ceratophyllum demersum GN=rps8 PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 3.228e-44 Identity = 95/120 (79.17%), Postives = 100/120 (83.33%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NADMN+K TVRI STNI E++V+ILLREGFIEN RK EN K FLV TLRHRRNR G YR IL KRISRPGLRIY N +RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILC IW Sbjct: 15 NADMNKKETVRIPSTNIIESIVRILLREGFIENVRKHQENNKNFLVSTLRHRRNRTGTYRNIL--KRISRPGLRIYSNSQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCSIW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ACOCL (30S ribosomal protein S8, chloroplastic OS=Acorus calamus GN=rps8 PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 7.190e-44 Identity = 93/119 (78.15%), Postives = 103/119 (86.55%), Query Frame = -2 Query: 327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683 NA M +KGTVRIASTN+TENVVKILLREGFIEN RK E+ K+FLVLTLRHRR RKG YR I LKRISRPGLRIY NY+ IP+IL G+GIVI+STSRGIMTDR ARL+ IGGE+LCYI Sbjct: 15 NAQMAKKGTVRIASTNLTENVVKILLREGFIENVRKHRESNKDFLVLTLRHRRTRKGIYRTI--LKRISRPGLRIYSNYQGIPKILGGIGIVIVSTSRGIMTDREARLQGIGGEMLCYI 131
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SORBI (30S ribosomal protein S8, chloroplastic OS=Sorghum bicolor GN=rps8 PE=3 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44 Identity = 90/122 (73.77%), Postives = 101/122 (82.79%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK E+ + FLV TLRH R+ RKG YR LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW Sbjct: 15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQRRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SACOF (30S ribosomal protein S8, chloroplastic OS=Saccharum officinarum GN=rps8 PE=3 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44 Identity = 90/122 (73.77%), Postives = 101/122 (82.79%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK E+ + FLV TLRH R+ RKG YR LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW Sbjct: 15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQRRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136 The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bpback to top |