CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ORYSJ (30S ribosomal protein S8, chloroplastic OS=Oryza sativa subsp. japonica GN=rps8 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 90/122 (73.77%), Postives = 101/122 (82.79%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK  E+ + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:   15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ORYSI (30S ribosomal protein S8, chloroplastic OS=Oryza sativa subsp. indica GN=rps8 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 90/122 (73.77%), Postives = 101/122 (82.79%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK  E+ + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:   15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ORYSA (30S ribosomal protein S8, chloroplastic OS=Oryza sativa GN=rps8 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 90/122 (73.77%), Postives = 101/122 (82.79%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK  E+ + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:   15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ORYNI (30S ribosomal protein S8, chloroplastic OS=Oryza nivara GN=rps8 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 90/122 (73.77%), Postives = 101/122 (82.79%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK  E+ + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:   15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_MAIZE (30S ribosomal protein S8, chloroplastic OS=Zea mays GN=rps8 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 90/122 (73.77%), Postives = 101/122 (82.79%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK  E+ + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:   15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQRRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_WHEAT (30S ribosomal protein S8, chloroplastic OS=Triticum aestivum GN=rps8 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.227e-43
Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK  E  + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:   15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQERNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYTNYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_AGRST (30S ribosomal protein S8, chloroplastic OS=Agrostis stolonifera GN=rps8 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.227e-43
Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK  E  + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:   15 NADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQERNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYTNYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PHAAO (30S ribosomal protein S8, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps8 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.602e-43
Identity = 89/120 (74.17%), Postives = 104/120 (86.67%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NAD+++KG V+I STNIT+N+VKILLREGFIEN RK  E++K FLV TLRHR+ RKG     +NLKRISRPGLRIY NY++IP+IL GMGIVILSTSRGI+TDR ARLE+IGGEILCYIW
Sbjct:   15 NADIDQKGRVKIVSTNITKNIVKILLREGFIENVRKHQESQKNFLVSTLRHRKTRKGNK---INLKRISRPGLRIYSNYQQIPKILGGMGIVILSTSRGIITDREARLEKIGGEILCYIW 131
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_LOLPR (30S ribosomal protein S8, chloroplastic OS=Lolium perenne GN=rps8 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.602e-43
Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK  E  + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:   15 NADMNKKGTVRVISTNITENIVKILLREGFIESVRKHQERNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYTNYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136
[Close]
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_HORVU (30S ribosomal protein S8, chloroplastic OS=Hordeum vulgare GN=rps8 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.092e-43
Identity = 89/122 (72.95%), Postives = 100/122 (81.97%), Query Frame = -2 
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADMN+KGTVR+ STNITEN+VKILLREGF+E+ RK  E  + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:   15 NADMNKKGTVRVVSTNITENIVKILLREGFLESVRKHQERNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYTNYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_ORYSJ9.391e-4473.7730S ribosomal protein S8, chloroplastic OS=Oryza s... [more]
RR8_ORYSI9.391e-4473.7730S ribosomal protein S8, chloroplastic OS=Oryza s... [more]
RR8_ORYSA9.391e-4473.7730S ribosomal protein S8, chloroplastic OS=Oryza s... [more]
RR8_ORYNI9.391e-4473.7730S ribosomal protein S8, chloroplastic OS=Oryza n... [more]
RR8_MAIZE9.391e-4473.7730S ribosomal protein S8, chloroplastic OS=Zea may... [more]
RR8_WHEAT1.227e-4373.7730S ribosomal protein S8, chloroplastic OS=Triticu... [more]
RR8_AGRST1.227e-4373.7730S ribosomal protein S8, chloroplastic OS=Agrosti... [more]
RR8_PHAAO1.602e-4374.1730S ribosomal protein S8, chloroplastic OS=Phalaen... [more]
RR8_LOLPR1.602e-4373.7730S ribosomal protein S8, chloroplastic OS=Lolium ... [more]
RR8_HORVU2.092e-4372.9530S ribosomal protein S8, chloroplastic OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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