CX295334
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_EPIVI (30S ribosomal protein S8, plastid OS=Epifagus virginiana GN=rps8 PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 5.697e-41 Identity = 88/120 (73.33%), Postives = 94/120 (78.33%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NAD RK VRI STNITEN VKIL EGFIENARK E K + LTLRHRRN K PY ILNLKRISRPGLRIY N ++IP IL G+GIVIL TSRGIMTDR ARL+ IGGE+LCYIW Sbjct: 15 NADRGRKRVVRITSTNITENFVKILFIEGFIENARKHREKNKYYFTLTLRHRRNSKRPYINILNLKRISRPGLRIYSNSQQIPLILGGIGIVILYTSRGIMTDREARLKGIGGELLCYIW 134
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CUSOB (30S ribosomal protein S8, plastid OS=Cuscuta obtusiflora GN=rps8 PE=3 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40 Identity = 82/120 (68.33%), Postives = 99/120 (82.50%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+M+ K TV+I S+NITEN++K+LLREGF+EN RK EN FLVLTLRH++ +KG + ILNLK+ISRPG RIY ++IPRIL G+GIVILSTS GI+TDR ARLE IGGEILCYIW Sbjct: 15 NANMDGKKTVKIPSSNITENIIKLLLREGFLENVRKHYENGNYFLVLTLRHQKTKKGTFTNILNLKKISRPGRRIYSTSKKIPRILGGIGIVILSTSHGILTDREARLEGIGGEILCYIW 134
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CUSGR (30S ribosomal protein S8, plastid OS=Cuscuta gronovii GN=rps8 PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 4.823e-40 Identity = 82/120 (68.33%), Postives = 98/120 (81.67%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+M+ K V+I S+NITEN++K+LLREGF+EN RK EN FLVLTLRH++ +KGP ILNLK+ISRPG RIY ++IPRIL G+GIVILSTS GI+TDR ARLE IGGEILCYIW Sbjct: 15 NANMDGKKMVKIPSSNITENIIKLLLREGFLENVRKHYENGNYFLVLTLRHQKTKKGPVTNILNLKQISRPGRRIYSMSKKIPRILGGIGIVILSTSHGILTDREARLEGIGGEILCYIW 134
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PINKO (30S ribosomal protein S8, chloroplastic OS=Pinus koraiensis GN=rps8 PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.235e-36 Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NADM KGTVR+ +TNIT+N+ +ILLREGFIE+ R+ E +K FL+ T ++RR +K Y + KR S+PGLRIY NYR IP++L GMGIVILSTS+GI+TDR AR ++IGGEILCY+W Sbjct: 15 NADMVEKGTVRVTATNITKNIGRILLREGFIEDVREHQEGQKSFLISTSKYRRRKKRTY--MTTSKRTSKPGLRIYSNYREIPKVLGGMGIVILSTSQGILTDREARQKKIGGEILCYVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PINTH (30S ribosomal protein S8, chloroplastic OS=Pinus thunbergii GN=rps8 PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.518e-36 Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NADM KGTVR+ +TNIT+N+ +ILLREGFIE+ R+ E +K FL+ T ++RR +K Y + KR S+PGLRIY NYR IP++L GMGIVILSTS+GI+TDR AR ++IGGEILCY+W Sbjct: 15 NADMVEKGTVRVTATNITKNIGRILLREGFIEDVREHQEGQKYFLISTSKYRRRKKRTY--MTTSKRTSKPGLRIYSNYREIPKVLGGMGIVILSTSQGILTDREARQKKIGGEILCYVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_JASNU (30S ribosomal protein S8, chloroplastic OS=Jasminum nudiflorum GN=rps8 PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.518e-36 Identity = 82/120 (68.33%), Postives = 88/120 (73.33%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA M+RK VRIASTNITEN+VKIL REGFIEN RK E K FL+L L+ R R LKRISRP LRIY N +RIPRI GMGIVILSTSRGIMTDR ARL +GGEILC IW Sbjct: 15 NAYMDRKRVVRIASTNITENIVKILFREGFIENVRKHREKNKSFLILNLQWNRKRLHKNLFSFKLKRISRPSLRIYSNSQRIPRIFGGMGIVILSTSRGIMTDREARLHGMGGEILCCIW 134
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ANGEV (30S ribosomal protein S8, chloroplastic OS=Angiopteris evecta GN=rps8 PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 4.672e-35 Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ TVRI +TN T++V KILL+EGFI N R+ EN + FL+LTL++R +K PY I NLKRIS+PGLRIY N+R IP++L GMGIVILSTS GI+TDR AR ++IGGEILCY+W Sbjct: 15 NANVIEATTVRIPATNTTKDVGKILLQEGFITNLREHKENTRSFLILTLKYRGRKKKPY--ITNLKRISKPGLRIYSNHREIPKVLGGMGIVILSTSSGIVTDREARQKQIGGEILCYVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PHYPA (30S ribosomal protein S8, chloroplastic OS=Physcomitrella patens GN=rps8 PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.775e-34 Identity = 71/120 (59.17%), Postives = 96/120 (80.00%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ + TV++ +TNIT+N+ KILL+EGFIEN R+ E+K FL+ TL+++ +K PY I L+RIS+PGLRIY N++ IP++L GMGIVILSTS GIMTDR AR ++IGGEILCY+W Sbjct: 15 NANLEKTKTVQVPATNITKNIGKILLQEGFIENFREHEESKNCFLIFTLKYQGKKKKPY--ITTLRRISKPGLRIYSNHKEIPKVLGGMGIVILSTSEGIMTDREAREKKIGGEILCYVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ANTFO (30S ribosomal protein S8, chloroplastic OS=Anthoceros formosae GN=rps8 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.775e-34 Identity = 70/120 (58.33%), Postives = 92/120 (76.67%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ R TV + +TN+T N+ KILLREGFIE+ + ENK FL+ L++R ++ PY I L+RIS+PGLRIY NY+ IPR+L G GIVILSTSRGI+TDR AR +++GGEILCY+W Sbjct: 15 NANLGRAETVEVPATNLTRNIAKILLREGFIESFSEHQENKNSFLIFILKYRGKKRKPY--ITTLRRISKPGLRIYSNYQEIPRVLGGTGIVILSTSRGIITDREARQKQVGGEILCYVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CYCTA (30S ribosomal protein S8, chloroplastic OS=Cycas taitungensis GN=rps8 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33 Identity = 73/119 (61.34%), Postives = 94/119 (78.99%), Query Frame = -2 Query: 327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683 NAD+ +K TVRI +TN T+NVV+ILL+EGFIE+AR+ E +K F VLTLR+R ++ Y I KR S+PGLRIY N +++P++L GMG+VILSTS+GIMTDR AR RIGGEILCY+ Sbjct: 15 NADIVKKKTVRIIATNTTKNVVRILLQEGFIEDAREHREGQKSFSVLTLRYRGRKEKTY--ITTSKRTSKPGLRIYSNSQKVPKVLGGMGVVILSTSQGIMTDREARRRRIGGEILCYV 131 The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bpback to top |