CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_EPIVI (30S ribosomal protein S8, plastid OS=Epifagus virginiana GN=rps8 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.697e-41
Identity = 88/120 (73.33%), Postives = 94/120 (78.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NAD  RK  VRI STNITEN VKIL  EGFIENARK  E  K +  LTLRHRRN K PY  ILNLKRISRPGLRIY N ++IP IL G+GIVIL TSRGIMTDR ARL+ IGGE+LCYIW
Sbjct:   15 NADRGRKRVVRITSTNITENFVKILFIEGFIENARKHREKNKYYFTLTLRHRRNSKRPYINILNLKRISRPGLRIYSNSQQIPLILGGIGIVILYTSRGIMTDREARLKGIGGELLCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CUSOB (30S ribosomal protein S8, plastid OS=Cuscuta obtusiflora GN=rps8 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40
Identity = 82/120 (68.33%), Postives = 99/120 (82.50%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+M+ K TV+I S+NITEN++K+LLREGF+EN RK  EN   FLVLTLRH++ +KG +  ILNLK+ISRPG RIY   ++IPRIL G+GIVILSTS GI+TDR ARLE IGGEILCYIW
Sbjct:   15 NANMDGKKTVKIPSSNITENIIKLLLREGFLENVRKHYENGNYFLVLTLRHQKTKKGTFTNILNLKKISRPGRRIYSTSKKIPRILGGIGIVILSTSHGILTDREARLEGIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CUSGR (30S ribosomal protein S8, plastid OS=Cuscuta gronovii GN=rps8 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.823e-40
Identity = 82/120 (68.33%), Postives = 98/120 (81.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+M+ K  V+I S+NITEN++K+LLREGF+EN RK  EN   FLVLTLRH++ +KGP   ILNLK+ISRPG RIY   ++IPRIL G+GIVILSTS GI+TDR ARLE IGGEILCYIW
Sbjct:   15 NANMDGKKMVKIPSSNITENIIKLLLREGFLENVRKHYENGNYFLVLTLRHQKTKKGPVTNILNLKQISRPGRRIYSMSKKIPRILGGIGIVILSTSHGILTDREARLEGIGGEILCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PINKO (30S ribosomal protein S8, chloroplastic OS=Pinus koraiensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.235e-36
Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM  KGTVR+ +TNIT+N+ +ILLREGFIE+ R+  E +K FL+ T ++RR +K  Y  +   KR S+PGLRIY NYR IP++L GMGIVILSTS+GI+TDR AR ++IGGEILCY+W
Sbjct:   15 NADMVEKGTVRVTATNITKNIGRILLREGFIEDVREHQEGQKSFLISTSKYRRRKKRTY--MTTSKRTSKPGLRIYSNYREIPKVLGGMGIVILSTSQGILTDREARQKKIGGEILCYVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PINTH (30S ribosomal protein S8, chloroplastic OS=Pinus thunbergii GN=rps8 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.518e-36
Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NADM  KGTVR+ +TNIT+N+ +ILLREGFIE+ R+  E +K FL+ T ++RR +K  Y  +   KR S+PGLRIY NYR IP++L GMGIVILSTS+GI+TDR AR ++IGGEILCY+W
Sbjct:   15 NADMVEKGTVRVTATNITKNIGRILLREGFIEDVREHQEGQKYFLISTSKYRRRKKRTY--MTTSKRTSKPGLRIYSNYREIPKVLGGMGIVILSTSQGILTDREARQKKIGGEILCYVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_JASNU (30S ribosomal protein S8, chloroplastic OS=Jasminum nudiflorum GN=rps8 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.518e-36
Identity = 82/120 (68.33%), Postives = 88/120 (73.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA M+RK  VRIASTNITEN+VKIL REGFIEN RK  E  K FL+L L+  R R         LKRISRP LRIY N +RIPRI  GMGIVILSTSRGIMTDR ARL  +GGEILC IW
Sbjct:   15 NAYMDRKRVVRIASTNITENIVKILFREGFIENVRKHREKNKSFLILNLQWNRKRLHKNLFSFKLKRISRPSLRIYSNSQRIPRIFGGMGIVILSTSRGIMTDREARLHGMGGEILCCIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ANGEV (30S ribosomal protein S8, chloroplastic OS=Angiopteris evecta GN=rps8 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.672e-35
Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++    TVRI +TN T++V KILL+EGFI N R+  EN + FL+LTL++R  +K PY  I NLKRIS+PGLRIY N+R IP++L GMGIVILSTS GI+TDR AR ++IGGEILCY+W
Sbjct:   15 NANVIEATTVRIPATNTTKDVGKILLQEGFITNLREHKENTRSFLILTLKYRGRKKKPY--ITNLKRISKPGLRIYSNHREIPKVLGGMGIVILSTSSGIVTDREARQKQIGGEILCYVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PHYPA (30S ribosomal protein S8, chloroplastic OS=Physcomitrella patens GN=rps8 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.775e-34
Identity = 71/120 (59.17%), Postives = 96/120 (80.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ +  TV++ +TNIT+N+ KILL+EGFIEN R+  E+K  FL+ TL+++  +K PY  I  L+RIS+PGLRIY N++ IP++L GMGIVILSTS GIMTDR AR ++IGGEILCY+W
Sbjct:   15 NANLEKTKTVQVPATNITKNIGKILLQEGFIENFREHEESKNCFLIFTLKYQGKKKKPY--ITTLRRISKPGLRIYSNHKEIPKVLGGMGIVILSTSEGIMTDREAREKKIGGEILCYVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ANTFO (30S ribosomal protein S8, chloroplastic OS=Anthoceros formosae GN=rps8 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.775e-34
Identity = 70/120 (58.33%), Postives = 92/120 (76.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ R  TV + +TN+T N+ KILLREGFIE+  +  ENK  FL+  L++R  ++ PY  I  L+RIS+PGLRIY NY+ IPR+L G GIVILSTSRGI+TDR AR +++GGEILCY+W
Sbjct:   15 NANLGRAETVEVPATNLTRNIAKILLREGFIESFSEHQENKNSFLIFILKYRGKKRKPY--ITTLRRISKPGLRIYSNYQEIPRVLGGTGIVILSTSRGIITDREARQKQVGGEILCYVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CYCTA (30S ribosomal protein S8, chloroplastic OS=Cycas taitungensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 73/119 (61.34%), Postives = 94/119 (78.99%), Query Frame = -2
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            NAD+ +K TVRI +TN T+NVV+ILL+EGFIE+AR+  E +K F VLTLR+R  ++  Y  I   KR S+PGLRIY N +++P++L GMG+VILSTS+GIMTDR AR  RIGGEILCY+
Sbjct:   15 NADIVKKKTVRIIATNTTKNVVRILLQEGFIEDAREHREGQKSFSVLTLRYRGRKEKTY--ITTSKRTSKPGLRIYSNSQKVPKVLGGMGVVILSTSQGIMTDREARRRRIGGEILCYV 131          
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_EPIVI5.697e-4173.3330S ribosomal protein S8, plastid OS=Epifagus virg... [more]
RR8_CUSOB1.269e-4068.3330S ribosomal protein S8, plastid OS=Cuscuta obtus... [more]
RR8_CUSGR4.823e-4068.3330S ribosomal protein S8, plastid OS=Cuscuta grono... [more]
RR8_PINKO3.235e-3661.6730S ribosomal protein S8, chloroplastic OS=Pinus k... [more]
RR8_PINTH5.518e-3661.6730S ribosomal protein S8, chloroplastic OS=Pinus t... [more]
RR8_JASNU5.518e-3668.3330S ribosomal protein S8, chloroplastic OS=Jasminu... [more]
RR8_ANGEV4.672e-3562.5030S ribosomal protein S8, chloroplastic OS=Angiopt... [more]
RR8_PHYPA1.775e-3459.1730S ribosomal protein S8, chloroplastic OS=Physcom... [more]
RR8_ANTFO1.775e-3458.3330S ribosomal protein S8, chloroplastic OS=Anthoce... [more]
RR8_CYCTA2.563e-3361.3430S ribosomal protein S8, chloroplastic OS=Cycas t... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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