CX295334
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_HUPLU (30S ribosomal protein S8, chloroplastic OS=Huperzia lucidula GN=rps8 PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.272e-32 Identity = 64/120 (53.33%), Postives = 94/120 (78.33%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ ++ TVR+ +TNI ++ KILL+EGF++N +L E F++LTL++R ++ PY I L+RIS+PGLR+Y+NY++IP++L GMG+VI STS G MTDR AR ++IGGEILCY+W Sbjct: 15 NANLGKEETVRVPATNINRSIGKILLQEGFVKNLGELREGTNHFMILTLKYRGRKREPY--ITTLRRISKPGLRLYYNYKKIPKVLGGMGVVIPSTSCGTMTDREARQKQIGGEILCYVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_MARPO (30S ribosomal protein S8, chloroplastic OS=Marchantia polymorpha GN=rps8 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.834e-32 Identity = 66/120 (55.00%), Postives = 92/120 (76.67%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ + TV++ +TNIT N+ KIL +EGFI+N +N K+ L+L L+++ +K Y I L+RIS+PGLRIY N++ IP++L GMGIVILSTSRGIMTDR AR ++IGGE+LCY+W Sbjct: 15 NANLGKIKTVQVPATNITRNIAKILFQEGFIDNFIDNKQNTKDILILNLKYQGKKKKSY--ITTLRRISKPGLRIYSNHKEIPKVLGGMGIVILSTSRGIMTDREARQKKIGGELLCYVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_MUSAC (30S ribosomal protein S8, chloroplastic (Fragment) OS=Musa acuminata GN=rps8 PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31 Identity = 72/96 (75.00%), Postives = 81/96 (84.38%), Query Frame = -2 Query: 396 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILST 683 NADMN+KGTVRIASTNITEN+VKILLREGFIEN RK E K FLV TLRHR+ RK +R I LKRISRPGLRIY +Y++IP+IL G+GIVILST Sbjct: 15 NADMNKKGTVRIASTNITENIVKILLREGFIENVRKHQEGNKYFLVSTLRHRKTRKRIHRTI--LKRISRPGLRIYSDYQQIPKILGGIGIVILST 108
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CHAGL (30S ribosomal protein S8, chloroplastic OS=Chaetosphaeridium globosum GN=rps8 PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31 Identity = 66/120 (55.00%), Postives = 91/120 (75.83%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ + + + +T IT+++ KILL+EGFI+N R+ EN K FL+LTLR +R + I ++RIS+PGLRIY N++ IP++L G+GIVILSTS+GIM+DR AR RIGGEILCYIW Sbjct: 15 NANLRKIKVIELPATKITKSIGKILLQEGFIDNLREREENNKNFLILTLRSQRRKHKA--SITTIRRISKPGLRIYSNHQEIPKVLGGIGIVILSTSQGIMSDRQARQNRIGGEILCYIW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_GNEPA (30S ribosomal protein S8, chloroplastic OS=Gnetum parvifolium GN=rps8 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29 Identity = 65/120 (54.17%), Postives = 90/120 (75.00%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA M +K TVR+ +T I EN +ILL+EGFI N R+ + +K FL+ TL++R+ + I+ LKRISRPG RIY ++ +IP++L GMGIVIL TS+GIMTDR AR ++IGGE+LC++W Sbjct: 13 NAYMVKKQTVRVNATRINENFGRILLQEGFIRNIREHKDGQKFFLIFTLKYRKRGE----KIITLKRISRPGWRIYSDFPKIPKVLGGMGIVILFTSQGIMTDREARKKKIGGELLCFVW 128
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_STAPU (30S ribosomal protein S8, chloroplastic OS=Staurastrum punctulatum GN=rps8 PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29 Identity = 63/120 (52.50%), Postives = 89/120 (74.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ + TV I +TN ++ KILL EGFI+ R+ E+ K LV+TLR++ ++ PY I +K+IS+ GLR+Y N++ IPR+L GMGIVILSTS+GI+ DR AR ++IGGEILCY+W Sbjct: 15 NANLRKTKTVEILATNTNRSIAKILLEEGFIDELRERQEDTKRLLVITLRYQGRKRKPY--ITTVKQISKAGLRVYSNHKDIPRVLGGMGIVILSTSQGIIIDREARDKQIGGEILCYVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PSINU (30S ribosomal protein S8, chloroplastic OS=Psilotum nudum GN=rps8 PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29 Identity = 63/120 (52.50%), Postives = 89/120 (74.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA+M + VR+ +T IT+N+VKILL+EGFI++ K + + F +LTL+++ + P+ I KRIS+P LRIY NY++I RIL GMGI I+STS GIMTDR AR +R+GGEI+C++W Sbjct: 15 NANMRKAVKVRVPATGITQNIVKILLQEGFIKDYMKQEKRTRSFFILTLKYQGRVRKPH--ITAFKRISKPSLRIYSNYQKITRILGGMGIAIISTSSGIMTDREARQKRLGGEIICHVW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CHAVU (30S ribosomal protein S8, chloroplastic OS=Chara vulgaris GN=rps8 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28 Identity = 63/122 (51.64%), Postives = 89/122 (72.95%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEF--LVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 N ++++ V+I +T ++ KILL EGFIEN R++V + K + L LTL+++ + PY I L+RIS+PGLR Y +Y+ IP+++ GMGIVILSTS+GI+TDR AR RIGGE+LCYIW Sbjct: 15 NGNLSKAKIVQIPATQTARSIAKILLDEGFIENFREVVISDKNYSLLTLTLKYQGRTREPY--ITTLRRISKPGLRSYSSYQDIPKVMGGMGIVILSTSQGIITDRQARQRRIGGEVLCYIW 134
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_WELMI (30S ribosomal protein S8, chloroplastic OS=Welwitschia mirabilis GN=rps8 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27 Identity = 59/120 (49.17%), Postives = 88/120 (73.33%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA + K VR+ +T EN+ +ILL+EGFI++ R+ + +K FL+ TL++R+ ++ + LKRIS+PG +IY ++ +P++L GMGI I+STSRGIMTDR AR ++IGGEILCY+W Sbjct: 13 NAYIVDKKIVRVTATRTNENIGRILLQEGFIKSIREHKDGQKSFLIFTLKYRKKKEKR----ITLKRISKPGRKIYSDFPNMPKVLGGMGIAIVSTSRGIMTDREARQKKIGGEILCYVW 128
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SPIMX (30S ribosomal protein S8, chloroplastic OS=Spirogyra maxima GN=rps8 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.585e-27 Identity = 60/119 (50.42%), Postives = 87/119 (73.11%), Query Frame = -2 Query: 327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683 NA +++ TV I +T T ++ KILL+EGFI+ R+ EN + L+LTL + R K + +L+RIS+PGLR+Y N++ IP++L G+GIVILSTS+GIM DR AR ++IGGEI+CY+ Sbjct: 15 NAILSKTKTVDILATTTTRSIAKILLQEGFIDGLRERQENGRRLLLLTLHYERKNKS--KITTSLRRISKPGLRVYSNHQEIPKVLGGIGIVILSTSKGIMVDREARHKKIGGEIICYV 131 The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bpback to top |