CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_HUPLU (30S ribosomal protein S8, chloroplastic OS=Huperzia lucidula GN=rps8 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.272e-32
Identity = 64/120 (53.33%), Postives = 94/120 (78.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ ++ TVR+ +TNI  ++ KILL+EGF++N  +L E    F++LTL++R  ++ PY  I  L+RIS+PGLR+Y+NY++IP++L GMG+VI STS G MTDR AR ++IGGEILCY+W
Sbjct:   15 NANLGKEETVRVPATNINRSIGKILLQEGFVKNLGELREGTNHFMILTLKYRGRKREPY--ITTLRRISKPGLRLYYNYKKIPKVLGGMGVVIPSTSCGTMTDREARQKQIGGEILCYVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_MARPO (30S ribosomal protein S8, chloroplastic OS=Marchantia polymorpha GN=rps8 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.834e-32
Identity = 66/120 (55.00%), Postives = 92/120 (76.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ +  TV++ +TNIT N+ KIL +EGFI+N     +N K+ L+L L+++  +K  Y  I  L+RIS+PGLRIY N++ IP++L GMGIVILSTSRGIMTDR AR ++IGGE+LCY+W
Sbjct:   15 NANLGKIKTVQVPATNITRNIAKILFQEGFIDNFIDNKQNTKDILILNLKYQGKKKKSY--ITTLRRISKPGLRIYSNHKEIPKVLGGMGIVILSTSRGIMTDREARQKKIGGELLCYVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_MUSAC (30S ribosomal protein S8, chloroplastic (Fragment) OS=Musa acuminata GN=rps8 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 72/96 (75.00%), Postives = 81/96 (84.38%), Query Frame = -2
Query:  396 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILST 683
            NADMN+KGTVRIASTNITEN+VKILLREGFIEN RK  E  K FLV TLRHR+ RK  +R I  LKRISRPGLRIY +Y++IP+IL G+GIVILST
Sbjct:   15 NADMNKKGTVRIASTNITENIVKILLREGFIENVRKHQEGNKYFLVSTLRHRKTRKRIHRTI--LKRISRPGLRIYSDYQQIPKILGGIGIVILST 108          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CHAGL (30S ribosomal protein S8, chloroplastic OS=Chaetosphaeridium globosum GN=rps8 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 66/120 (55.00%), Postives = 91/120 (75.83%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ +   + + +T IT+++ KILL+EGFI+N R+  EN K FL+LTLR +R +      I  ++RIS+PGLRIY N++ IP++L G+GIVILSTS+GIM+DR AR  RIGGEILCYIW
Sbjct:   15 NANLRKIKVIELPATKITKSIGKILLQEGFIDNLREREENNKNFLILTLRSQRRKHKA--SITTIRRISKPGLRIYSNHQEIPKVLGGIGIVILSTSQGIMSDRQARQNRIGGEILCYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_GNEPA (30S ribosomal protein S8, chloroplastic OS=Gnetum parvifolium GN=rps8 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 65/120 (54.17%), Postives = 90/120 (75.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA M +K TVR+ +T I EN  +ILL+EGFI N R+  + +K FL+ TL++R+  +     I+ LKRISRPG RIY ++ +IP++L GMGIVIL TS+GIMTDR AR ++IGGE+LC++W
Sbjct:   13 NAYMVKKQTVRVNATRINENFGRILLQEGFIRNIREHKDGQKFFLIFTLKYRKRGE----KIITLKRISRPGWRIYSDFPKIPKVLGGMGIVILFTSQGIMTDREARKKKIGGELLCFVW 128          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_STAPU (30S ribosomal protein S8, chloroplastic OS=Staurastrum punctulatum GN=rps8 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 63/120 (52.50%), Postives = 89/120 (74.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ +  TV I +TN   ++ KILL EGFI+  R+  E+ K  LV+TLR++  ++ PY  I  +K+IS+ GLR+Y N++ IPR+L GMGIVILSTS+GI+ DR AR ++IGGEILCY+W
Sbjct:   15 NANLRKTKTVEILATNTNRSIAKILLEEGFIDELRERQEDTKRLLVITLRYQGRKRKPY--ITTVKQISKAGLRVYSNHKDIPRVLGGMGIVILSTSQGIIIDREARDKQIGGEILCYVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PSINU (30S ribosomal protein S8, chloroplastic OS=Psilotum nudum GN=rps8 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 63/120 (52.50%), Postives = 89/120 (74.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA+M +   VR+ +T IT+N+VKILL+EGFI++  K  +  + F +LTL+++   + P+  I   KRIS+P LRIY NY++I RIL GMGI I+STS GIMTDR AR +R+GGEI+C++W
Sbjct:   15 NANMRKAVKVRVPATGITQNIVKILLQEGFIKDYMKQEKRTRSFFILTLKYQGRVRKPH--ITAFKRISKPSLRIYSNYQKITRILGGMGIAIISTSSGIMTDREARQKRLGGEIICHVW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CHAVU (30S ribosomal protein S8, chloroplastic OS=Chara vulgaris GN=rps8 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 63/122 (51.64%), Postives = 89/122 (72.95%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEF--LVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            N ++++   V+I +T    ++ KILL EGFIEN R++V + K +  L LTL+++   + PY  I  L+RIS+PGLR Y +Y+ IP+++ GMGIVILSTS+GI+TDR AR  RIGGE+LCYIW
Sbjct:   15 NGNLSKAKIVQIPATQTARSIAKILLDEGFIENFREVVISDKNYSLLTLTLKYQGRTREPY--ITTLRRISKPGLRSYSSYQDIPKVMGGMGIVILSTSQGIITDRQARQRRIGGEVLCYIW 134          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_WELMI (30S ribosomal protein S8, chloroplastic OS=Welwitschia mirabilis GN=rps8 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 59/120 (49.17%), Postives = 88/120 (73.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA +  K  VR+ +T   EN+ +ILL+EGFI++ R+  + +K FL+ TL++R+ ++      + LKRIS+PG +IY ++  +P++L GMGI I+STSRGIMTDR AR ++IGGEILCY+W
Sbjct:   13 NAYIVDKKIVRVTATRTNENIGRILLQEGFIKSIREHKDGQKSFLIFTLKYRKKKEKR----ITLKRISKPGRKIYSDFPNMPKVLGGMGIAIVSTSRGIMTDREARQKKIGGEILCYVW 128          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_SPIMX (30S ribosomal protein S8, chloroplastic OS=Spirogyra maxima GN=rps8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.585e-27
Identity = 60/119 (50.42%), Postives = 87/119 (73.11%), Query Frame = -2
Query:  327 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 683
            NA +++  TV I +T  T ++ KILL+EGFI+  R+  EN +  L+LTL + R  K   +   +L+RIS+PGLR+Y N++ IP++L G+GIVILSTS+GIM DR AR ++IGGEI+CY+
Sbjct:   15 NAILSKTKTVDILATTTTRSIAKILLQEGFIDGLRERQENGRRLLLLTLHYERKNKS--KITTSLRRISKPGLRVYSNHQEIPKVLGGIGIVILSTSKGIMVDREARHKKIGGEIICYV 131          
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_HUPLU1.272e-3253.3330S ribosomal protein S8, chloroplastic OS=Huperzi... [more]
RR8_MARPO4.834e-3255.0030S ribosomal protein S8, chloroplastic OS=Marchan... [more]
RR8_MUSAC2.399e-3175.0030S ribosomal protein S8, chloroplastic (Fragment)... [more]
RR8_CHAGL5.345e-3155.0030S ribosomal protein S8, chloroplastic OS=Chaetos... [more]
RR8_GNEPA1.719e-2954.1730S ribosomal protein S8, chloroplastic OS=Gnetum ... [more]
RR8_STAPU2.246e-2952.5030S ribosomal protein S8, chloroplastic OS=Stauras... [more]
RR8_PSINU2.933e-2952.5030S ribosomal protein S8, chloroplastic OS=Psilotu... [more]
RR8_CHAVU7.224e-2851.6430S ribosomal protein S8, chloroplastic OS=Chara v... [more]
RR8_WELMI2.745e-2749.1730S ribosomal protein S8, chloroplastic OS=Welwits... [more]
RR8_SPIMX3.585e-2750.4230S ribosomal protein S8, chloroplastic OS=Spirogy... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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