CX295334
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_GRATL (30S ribosomal protein S8, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rps8 PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.682e-27 Identity = 55/120 (45.83%), Postives = 88/120 (73.33%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ + V++ ST +T N++K+L EGFI ++ E+ ++L+++L+++ RK P I +LKRIS+PGLR+Y NY+ +P++L G+GI I+STS+G+M+D AR +GGEILCYIW Sbjct: 15 NANLAKHQIVQVCSTKMTRNIIKVLQEEGFIYKFEEIGEDNNKYLLISLKYKGKRKKPV--ITSLKRISKPGLRVYANYKELPKVLGGIGIAIISTSKGVMSDYHARHYGLGGEILCYIW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CHLAT (30S ribosomal protein S8, chloroplastic OS=Chlorokybus atmophyticus GN=rps8 PE=3 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27 Identity = 59/121 (48.76%), Postives = 88/121 (72.73%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKL-VENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ R+ V++ ++N T ++ IL EGF+E + + ++ L++TL+++ R+ PY I LKRIS+PGLR+Y N R IPR+L G+GI I+STS+GIMTDR AR E++GGEILCY+W Sbjct: 15 NANLVRQTNVQVIASNTTNSIASILKDEGFVEKIQTIETDSGLSSLLITLKYQGKRRKPY--ITALKRISKPGLRVYANSREIPRVLGGIGIAIISTSKGIMTDRRARHEKVGGEILCYVW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_CYAP8 (30S ribosomal protein S8 OS=Cyanothece sp. (strain PCC 8801) GN=rpsH PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26 Identity = 58/121 (47.93%), Postives = 87/121 (71.90%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA R T ++ +T +T ++ ++L EGFIE + E +++LVLTL+++ + +PI+N LKR+S+PGLR+Y N + +PR+L G+GI I+STS+GIMTDR AR + +GGEILCYIW Sbjct: 16 NACAVRHPTTQVPTTKMTRSIAQVLKEEGFIEGFEETGEGVQKYLVLTLKYKDKNR---QPIINMLKRVSKPGLRVYSNCKDLPRVLGGIGIAIVSTSKGIMTDREARRQNVGGEILCYIW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_RHDSA (30S ribosomal protein S8, chloroplastic OS=Rhodomonas salina GN=rps8 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26 Identity = 55/120 (45.83%), Postives = 86/120 (71.67%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ R V++ ST +T+N+ +LL EGFI+N ++ + + L+L+L+++ + P I LKRISRPGLR+Y N + +PR+L G+GI ++STSRG++TD AR + +GGE+LCYIW Sbjct: 15 NANLARHQIVQVPSTKMTKNIADVLLEEGFIQNFEEVGDGINKQLLLSLKYKGKEREPV--ITALKRISRPGLRVYANRKELPRVLGGLGIAVISTSRGVLTDNKARHQGLGGEVLCYIW 132
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SYNP2 (30S ribosomal protein S8 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsH PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 55/120 (45.83%), Postives = 84/120 (70.00%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA M + ++ T +T N+ ++L EGFIEN + E ++ LV++L+++ + P I L+R+S+PGLR+Y N++ +PR+L G+GI I+STS+G+MTDR AR E IGGEILCY+W Sbjct: 16 NACMVQHDNTKVPMTRMTRNIAEVLKDEGFIENYTEAGEGIEKHLVISLKYKGRNRQPI--IQKLQRVSKPGLRVYSNHKDLPRVLGGIGIAIISTSKGVMTDRQARKEGIGGEILCYVW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_NOSP7 (30S ribosomal protein S8 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsH PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ R T ++ +T +T ++ K+L EGFI + E K LV++L+++ + P I LKR+S+PGLR+Y N + +PR+L G+GI I+STS GIMTDR AR + +GGE+LCY+W Sbjct: 16 NANLARHQTTQVPATKMTRSIAKVLREEGFIAEIEEAEEGVKHNLVISLKYKGKNRQPL--ITALKRVSKPGLRVYSNRKELPRVLGGIGIAIISTSSGIMTDREARRQNLGGEVLCYVW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PORPU (30S ribosomal protein S8, chloroplastic OS=Porphyra purpurea GN=rps8 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 54/120 (45.00%), Postives = 84/120 (70.00%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ R V++ +T +T N+ +L EGF+ N ++ E + L+++L++ + P I LKRIS+PGLR+Y N++ +PR+L G+GI I+STS+G+MTDR AR + +GGEILCYIW Sbjct: 16 NANLARHQIVQVPATKVTRNMALVLKEEGFVHNFEQMGEGIETHLMISLKYNGKNRQPV--ITALKRISKPGLRVYANHKELPRVLGGLGIAIISTSQGVMTDRQARHDGLGGEILCYIW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_THEEB (30S ribosomal protein S8 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsH PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25 Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ R T I +T +T ++ ++L EGFI + + + K LV++L++R ++ P I LKR+S+PGLR+Y N R +PR+L G+GI I+STS GIMTDR AR + IGGE+LCY+W Sbjct: 16 NANLARHQTTTIPATRMTRSIAQVLKAEGFIRDFEEQGDGVKRHLVVSLKYRGKQRQPI--ITALKRVSKPGLRVYANSRELPRVLGGIGIAIISTSNGIMTDREARKQGIGGEVLCYVW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PORYE (30S ribosomal protein S8, chloroplastic OS=Porphyra yezoensis GN=rps8 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25 Identity = 54/120 (45.00%), Postives = 85/120 (70.83%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 NA++ R V++ +T +T N+ +L EGF++N ++ E + L+++L++ + P I LKRIS+PGLR+Y N++ +PR+L G+GI ++STSRG+MTDR AR + +GGEILCYIW Sbjct: 16 NANLARHQIVQVPATKMTCNMATVLKEEGFVQNFEQMGEGIETHLMISLKYNGKNRQPV--ITALKRISKPGLRVYANHKELPRVLGGLGIALISTSRGVMTDRQARHDGLGGEILCYIW 133
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ZYGCR (30S ribosomal protein S8, chloroplastic OS=Zygnema circumcarinatum GN=rps8 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.569e-25 Identity = 55/120 (45.83%), Postives = 84/120 (70.00%), Query Frame = -2 Query: 324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683 N ++++ TV + +T IT ++ ILL+EG+I N R+ N LV+TL+++ + P+ I+ K IS+PGLR+Y N++ IP+ L MGIVILSTS+GIM R AR +++GGE+LCY+W Sbjct: 15 NGNLSKAKTVEVPATQITRSIANILLQEGYIANVRERQYNAIRMLVITLKYQTKTRKPHITII--KYISKPGLRVYSNHQDIPQFLGEMGIVILSTSKGIMMHREARAQKVGGEVLCYVW 132 The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bpback to top |