CX295334

Overview
NameCX295334
Unique NameCX295334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_GRATL (30S ribosomal protein S8, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rps8 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.682e-27
Identity = 55/120 (45.83%), Postives = 88/120 (73.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ +   V++ ST +T N++K+L  EGFI    ++ E+  ++L+++L+++  RK P   I +LKRIS+PGLR+Y NY+ +P++L G+GI I+STS+G+M+D  AR   +GGEILCYIW
Sbjct:   15 NANLAKHQIVQVCSTKMTRNIIKVLQEEGFIYKFEEIGEDNNKYLLISLKYKGKRKKPV--ITSLKRISKPGLRVYANYKELPKVLGGIGIAIISTSKGVMSDYHARHYGLGGEILCYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_CHLAT (30S ribosomal protein S8, chloroplastic OS=Chlorokybus atmophyticus GN=rps8 PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27
Identity = 59/121 (48.76%), Postives = 88/121 (72.73%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKL-VENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ R+  V++ ++N T ++  IL  EGF+E  + +  ++    L++TL+++  R+ PY  I  LKRIS+PGLR+Y N R IPR+L G+GI I+STS+GIMTDR AR E++GGEILCY+W
Sbjct:   15 NANLVRQTNVQVIASNTTNSIASILKDEGFVEKIQTIETDSGLSSLLITLKYQGKRRKPY--ITALKRISKPGLRVYANSREIPRVLGGIGIAIISTSKGIMTDRRARHEKVGGEILCYVW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_CYAP8 (30S ribosomal protein S8 OS=Cyanothece sp. (strain PCC 8801) GN=rpsH PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26
Identity = 58/121 (47.93%), Postives = 87/121 (71.90%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA   R  T ++ +T +T ++ ++L  EGFIE   +  E  +++LVLTL+++   +   +PI+N LKR+S+PGLR+Y N + +PR+L G+GI I+STS+GIMTDR AR + +GGEILCYIW
Sbjct:   16 NACAVRHPTTQVPTTKMTRSIAQVLKEEGFIEGFEETGEGVQKYLVLTLKYKDKNR---QPIINMLKRVSKPGLRVYSNCKDLPRVLGGIGIAIVSTSKGIMTDREARRQNVGGEILCYIW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_RHDSA (30S ribosomal protein S8, chloroplastic OS=Rhodomonas salina GN=rps8 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26
Identity = 55/120 (45.83%), Postives = 86/120 (71.67%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ R   V++ ST +T+N+  +LL EGFI+N  ++ +   + L+L+L+++   + P   I  LKRISRPGLR+Y N + +PR+L G+GI ++STSRG++TD  AR + +GGE+LCYIW
Sbjct:   15 NANLARHQIVQVPSTKMTKNIADVLLEEGFIQNFEEVGDGINKQLLLSLKYKGKEREPV--ITALKRISRPGLRVYANRKELPRVLGGLGIAVISTSRGVLTDNKARHQGLGGEVLCYIW 132          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_SYNP2 (30S ribosomal protein S8 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsH PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 55/120 (45.83%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA M +    ++  T +T N+ ++L  EGFIEN  +  E  ++ LV++L+++   + P   I  L+R+S+PGLR+Y N++ +PR+L G+GI I+STS+G+MTDR AR E IGGEILCY+W
Sbjct:   16 NACMVQHDNTKVPMTRMTRNIAEVLKDEGFIENYTEAGEGIEKHLVISLKYKGRNRQPI--IQKLQRVSKPGLRVYSNHKDLPRVLGGIGIAIISTSKGVMTDRQARKEGIGGEILCYVW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_NOSP7 (30S ribosomal protein S8 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsH PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ R  T ++ +T +T ++ K+L  EGFI    +  E  K  LV++L+++   + P   I  LKR+S+PGLR+Y N + +PR+L G+GI I+STS GIMTDR AR + +GGE+LCY+W
Sbjct:   16 NANLARHQTTQVPATKMTRSIAKVLREEGFIAEIEEAEEGVKHNLVISLKYKGKNRQPL--ITALKRVSKPGLRVYSNRKELPRVLGGIGIAIISTSSGIMTDREARRQNLGGEVLCYVW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PORPU (30S ribosomal protein S8, chloroplastic OS=Porphyra purpurea GN=rps8 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 54/120 (45.00%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ R   V++ +T +T N+  +L  EGF+ N  ++ E  +  L+++L++    + P   I  LKRIS+PGLR+Y N++ +PR+L G+GI I+STS+G+MTDR AR + +GGEILCYIW
Sbjct:   16 NANLARHQIVQVPATKVTRNMALVLKEEGFVHNFEQMGEGIETHLMISLKYNGKNRQPV--ITALKRISKPGLRVYANHKELPRVLGGLGIAIISTSQGVMTDRQARHDGLGGEILCYIW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RS8_THEEB (30S ribosomal protein S8 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ R  T  I +T +T ++ ++L  EGFI +  +  +  K  LV++L++R  ++ P   I  LKR+S+PGLR+Y N R +PR+L G+GI I+STS GIMTDR AR + IGGE+LCY+W
Sbjct:   16 NANLARHQTTTIPATRMTRSIAQVLKAEGFIRDFEEQGDGVKRHLVVSLKYRGKQRQPI--ITALKRVSKPGLRVYANSRELPRVLGGIGIAIISTSNGIMTDREARKQGIGGEVLCYVW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_PORYE (30S ribosomal protein S8, chloroplastic OS=Porphyra yezoensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25
Identity = 54/120 (45.00%), Postives = 85/120 (70.83%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            NA++ R   V++ +T +T N+  +L  EGF++N  ++ E  +  L+++L++    + P   I  LKRIS+PGLR+Y N++ +PR+L G+GI ++STSRG+MTDR AR + +GGEILCYIW
Sbjct:   16 NANLARHQIVQVPATKMTCNMATVLKEEGFVQNFEQMGEGIETHLMISLKYNGKNRQPV--ITALKRISKPGLRVYANHKELPRVLGGLGIALISTSRGVMTDRQARHDGLGGEILCYIW 133          
BLAST of CX295334 vs. ExPASy Swiss-Prot
Match: RR8_ZYGCR (30S ribosomal protein S8, chloroplastic OS=Zygnema circumcarinatum GN=rps8 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.569e-25
Identity = 55/120 (45.83%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  324 NADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 683
            N ++++  TV + +T IT ++  ILL+EG+I N R+   N    LV+TL+++   + P+  I+  K IS+PGLR+Y N++ IP+ L  MGIVILSTS+GIM  R AR +++GGE+LCY+W
Sbjct:   15 NGNLSKAKTVEVPATQITRSIANILLQEGYIANVRERQYNAIRMLVITLKYQTKTRKPHITII--KYISKPGLRVYSNHQDIPQFLGEMGIVILSTSKGIMMHREARAQKVGGEVLCYVW 132          
The following BLAST results are available for this feature:
BLAST of CX295334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_GRATL4.682e-2745.8330S ribosomal protein S8, chloroplastic OS=Gracila... [more]
RR8_CHLAT6.115e-2748.7630S ribosomal protein S8, chloroplastic OS=Chlorok... [more]
RS8_CYAP82.324e-2647.9330S ribosomal protein S8 OS=Cyanothece sp. (strain... [more]
RR8_RHDSA2.324e-2645.8330S ribosomal protein S8, chloroplastic OS=Rhodomo... [more]
RS8_SYNP21.153e-2545.8330S ribosomal protein S8 OS=Synechococcus sp. (str... [more]
RS8_NOSP71.153e-2545.0030S ribosomal protein S8 OS=Nostoc punctiforme (st... [more]
RR8_PORPU1.153e-2545.0030S ribosomal protein S8, chloroplastic OS=Porphyr... [more]
RS8_THEEB1.506e-2546.6730S ribosomal protein S8 OS=Thermosynechococcus el... [more]
RR8_PORYE1.506e-2545.0030S ribosomal protein S8, chloroplastic OS=Porphyr... [more]
RR8_ZYGCR2.569e-2545.8330S ribosomal protein S8, chloroplastic OS=Zygnema... [more]

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Properties
Property NameValue
Genbank descriptionC05071B04SK PhIFruit1 Citrus clementina cDNA clone C05071B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295334 ID=CX295334; Name=CX295334; organism=Citrus clementina; type=EST; length=684bp
AAAGGAATGTTGAAAAATCACCTAATCACTCAAATCCTTTTGTCTAGTCT
ATATATTATTATTATATCCTCCAGTTGAATCTGAATCATAACGACTTCCT
TCAATTTTGCCTCTAGCCACCGGGAGTAGATGTAGAAAAACGGGTCGCAT
CCCTCCTGAAACATAATCTAGAATCTTACTTCGCTCTCTAAACTATCTAA
AAGAACCCGGAGCATACCTTTGGTAAGTTATTCGGTAATTAAACCTCGAG
GAATCCTCCCCTTTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATA
CAATTCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACC
GATTCTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAG
AGAGAATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAG
TTAAAATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAAT
GGGTCTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCA
AAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAACCC
TCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCTAT
TCGAACCGTTCCCTTTCTATTCATGTCAGCATTT
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