CX295337

Overview
NameCX295337
Unique NameCX295337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH064_ARATH (Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.165e-25
Identity = 64/126 (50.79%), Postives = 79/126 (62.70%), Query Frame = 1
Query:  283 MDKKRKNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            +  KRK            + K   E +++   KG  N    E   ++ K ++ K  ++    DYIHVRARRGQATD HSLAER RREKIS++MK LQ +VPGC+KVTGKA MLDEIINYVQ LQ Q
Sbjct:  121 LKNKRKPEVKTREE-QKTEKKIKVEAETESSMKGKSNMGNTEASSDTSK-ETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQ 244          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BEE2_ARATH (Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 65/121 (53.72%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  304 RTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKAD-SEKKVAKEPPK-DYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            + N  S   + Q+K   E K++K++K  +    + E     K++ S  + + E  K DYIHVRARRG+ATD HSLAER RREKIS++MK LQ +VPGC+KVTGKA MLDEIINYVQ LQ Q
Sbjct:   80 KNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQ 200          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.127e-24
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:  361 KSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            K  K++ G+    K+ E+E +   D  +K     PKD +HVRA+RGQATDSHSLAERVRREKI+ER+K LQ LVPGC K  G A MLD II+YV+ LQNQ
Sbjct:   69 KGNKEESGSKRRRKRSEEEEAMNGDETQK-----PKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQ 163          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH048_ARATH (Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.097e-24
Identity = 59/108 (54.63%), Postives = 79/108 (73.15%), Query Frame = 1
Query:  346 DPREVKSKKQKKG-NVNDAKKEEKENSPKADSEK-KVAKEPPK-DYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            +P E  S  + +  + +  K++E+E   K+ ++K K + E  K  Y+HVRARRGQATD+HSLAER RREKI+ RMK+LQ+LVPGCDK+ G A +LDEIIN+VQ LQ Q
Sbjct:  137 EPAETDSMVENQNQSYSSGKRKEREKKVKSSTKKNKSSVESDKLPYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQ 244          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BEE3_ARATH (Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.457e-23
Identity = 62/125 (49.60%), Postives = 80/125 (64.00%), Query Frame = 1
Query:  289 KKRKNRTNA-SSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            KKRK+   A S+S NS   +      ++    GN++     +  +S +    K   +E  ++ +HVRARRGQATDSHS+AERVRR KI+ER+K LQ +VPGC K  G A MLDEIINYVQ LQNQ
Sbjct:   86 KKRKSLMEAVSTSENSVSDQTLSTSSAQVSINGNIST----KNNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQ 206          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BEE1_ARATH (Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 61/124 (49.19%), Postives = 79/124 (63.71%), Query Frame = 1
Query:  289 KKRKNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            KKRK      SS  ++   D   V + +   G++   K+ +K+   + + E++V        +HVRARRGQATDSHSLAERVRR KI+ER++ LQ +VPGC K  G A MLDEIINYVQ LQNQ
Sbjct:   91 KKRKALLPTLSSSETSGVSDNTNVIATET--GSLRRGKRLKKKKEEEDEKEREV--------VHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQ 204          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH060_ARATH (Transcription factor bHLH60 OS=Arabidopsis thaliana GN=BHLH60 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 57/146 (39.04%), Postives = 73/146 (50.00%), Query Frame = 1
Query:  364 SKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDK-----------------------------------------------VTGKAFMLDEIINYVQFLQNQ 660
            ++  + G   D +K+ K ++ K  S ++  K P   Y+HVRARRGQATDSHSLAER RREKI+ RMK+LQ+LVPGCDK                                               + G A +LDEIIN+VQ LQ Q
Sbjct:  168 NQNNRNGKRKDFEKKGKSSTKKNKSSEENEKLP---YVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGTDFGGKIKIKVCFGVHLLMISGKKVAIFLWKVSCEDLIDCSFSPPRIQGTALVLDEIINHVQSLQRQ 310          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH066_ARATH (Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  382 GNVNDAKKEEKENSPKADSEKKVA---KEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            G +N   + + +  P+A +          PP+    +RARRGQATD HS+AER+RRE+I+ERMK LQ+LVP  +K T KA MLDEII+YV+FLQ Q
Sbjct:  102 GLMNQQGQTQTQTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQLQ 196          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH082_ARATH (Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  448 VAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            V ++ P+    VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP  +K T KA MLDEII YV+FLQ Q
Sbjct:   92 VVRQKPR----VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQLQ 157          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH069_ARATH (Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  451 AKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            A   P+    VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP  +K T KA MLDEII+YV+FLQ Q
Sbjct:  120 ATAQPQTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQLQ 188          
The following BLAST results are available for this feature:
BLAST of CX295337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
BH064_ARATH2.165e-2550.79Transcription factor bHLH64 OS=Arabidopsis thalian... [more]
BEE2_ARATH2.828e-2553.72Transcription factor BEE 2 OS=Arabidopsis thaliana... [more]
BH075_ARATH3.127e-2458.00Transcription factor bHLH75 OS=Arabidopsis thalian... [more]
BH048_ARATH9.097e-2454.63Transcription factor bHLH48 OS=Arabidopsis thalian... [more]
BEE3_ARATH3.457e-2349.60Transcription factor BEE 3 OS=Arabidopsis thaliana... [more]
BEE1_ARATH1.112e-2149.19Transcription factor BEE 1 OS=Arabidopsis thaliana... [more]
BH060_ARATH2.170e-1739.04Transcription factor bHLH60 OS=Arabidopsis thalian... [more]
BH066_ARATH3.702e-1751.04Transcription factor bHLH66 OS=Arabidopsis thalian... [more]
BH082_ARATH1.555e-1564.79Transcription factor bHLH82 OS=Arabidopsis thalian... [more]
BH069_ARATH1.555e-1565.71Transcription factor bHLH69 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC05071B07SK PhIFruit1 Citrus clementina cDNA clone C05071B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295337 ID=CX295337; Name=CX295337; organism=Citrus clementina; type=EST; length=721bp
GAAGGCAGTTTTTTCTCTCAACTTTATTACCCACCAAAATTTCCTACTCA
TGATGATCATCAAGAGATGATTGTTGTTAATAATAACAGCAATAATCTTC
TTGATGCAGCTGCAGTTTTTGAAACTAGCTGTGGTGACAATCATGATCAT
CACAGTGATGATAATTGTAATGAGCCTTCTAATAATAATTCTTTAGCCAC
CAAAAACCAAAGCACTGCAGTGTCTTCAACTGAGCAGCAGGTCACTCAGA
GTACTGTGACGACTACCGCTACTACTACTCGTATGGACAAGAAAAGGAAG
AACAGAACTAATGCTTCCTCTTCTTTCAATTCTGCTCAGTCAAAGGATCC
AAGAGAAGTGAAAAGCAAGAAGCAAAAGAAAGGCAATGTTAATGATGCCA
AGAAAGAAGAAAAGGAAAATAGTCCTAAAGCTGATAGTGAGAAGAAAGTT
GCTAAAGAACCTCCAAAAGATTACATTCATGTTAGAGCAAGGAGGGGTCA
AGCAACTGACAGCCACAGCTTAGCAGAAAGGGTAAGAAGAGAGAAAATTA
GTGAGAGGATGAAAATTTTGCAAAAGCTTGTTCCTGGCTGTGACAAGGTA
ACTGGTAAGGCCTTCATGTTGGATGAAATTATCAACTATGTACAGTTCTT
ACAAAACCAGTGGAGTTCCCTCTCATGAAGCTTGCTTCTGTGAATCCCAT
GTCTATGATTTTGGAATGGAC
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