CX295337

Overview
NameCX295337
Unique NameCX295337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: UNE12_ARATH (Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  481 VRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            VRARRGQATD HS+AER+RRE+I+ER++ LQ+LVP  +K T +A M+DEI++YV+FL+ Q
Sbjct:  146 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNK-TDRAAMIDEIVDYVKFLRLQ 204          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: BH007_ARATH (Transcription factor bHLH7 OS=Arabidopsis thaliana GN=BHLH7 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  481 VRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            VRARRGQATD HS+AER+RRE+I+ER++ LQ+LVP  +K T +A M+DEI++YV+FL+ Q
Sbjct:  144 VRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNK-TDRAAMIDEIVDYVKFLRLQ 202          
BLAST of CX295337 vs. ExPASy Swiss-Prot
Match: PIF1_ARATH (Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1
Query:  307 TNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQ 660
            T  SSS  S    +P        +K NV+D K++E+E +   ++E +  +           +R +A + H+L+ER RR++I+ERMK LQ+L+P C+K + KA MLDE I Y++ LQ Q
Sbjct:  228 TGTSSSVVSKSEIEP--------EKTNVDDRKRKEREATTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNK-SDKASMLDEAIEYMKSLQLQ 336          
The following BLAST results are available for this feature:
BLAST of CX295337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
UNE12_ARATH1.901e-1363.33Transcription factor UNE12 OS=Arabidopsis thaliana... [more]
BH007_ARATH2.483e-1363.33Transcription factor bHLH7 OS=Arabidopsis thaliana... [more]
PIF1_ARATH1.232e-1237.29Transcription factor PIF1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC05071B07SK PhIFruit1 Citrus clementina cDNA clone C05071B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295337 ID=CX295337; Name=CX295337; organism=Citrus clementina; type=EST; length=721bp
GAAGGCAGTTTTTTCTCTCAACTTTATTACCCACCAAAATTTCCTACTCA
TGATGATCATCAAGAGATGATTGTTGTTAATAATAACAGCAATAATCTTC
TTGATGCAGCTGCAGTTTTTGAAACTAGCTGTGGTGACAATCATGATCAT
CACAGTGATGATAATTGTAATGAGCCTTCTAATAATAATTCTTTAGCCAC
CAAAAACCAAAGCACTGCAGTGTCTTCAACTGAGCAGCAGGTCACTCAGA
GTACTGTGACGACTACCGCTACTACTACTCGTATGGACAAGAAAAGGAAG
AACAGAACTAATGCTTCCTCTTCTTTCAATTCTGCTCAGTCAAAGGATCC
AAGAGAAGTGAAAAGCAAGAAGCAAAAGAAAGGCAATGTTAATGATGCCA
AGAAAGAAGAAAAGGAAAATAGTCCTAAAGCTGATAGTGAGAAGAAAGTT
GCTAAAGAACCTCCAAAAGATTACATTCATGTTAGAGCAAGGAGGGGTCA
AGCAACTGACAGCCACAGCTTAGCAGAAAGGGTAAGAAGAGAGAAAATTA
GTGAGAGGATGAAAATTTTGCAAAAGCTTGTTCCTGGCTGTGACAAGGTA
ACTGGTAAGGCCTTCATGTTGGATGAAATTATCAACTATGTACAGTTCTT
ACAAAACCAGTGGAGTTCCCTCTCATGAAGCTTGCTTCTGTGAATCCCAT
GTCTATGATTTTGGAATGGAC
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