CX295345

Overview
NameCX295345
Unique NameCX295345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295345 vs. ExPASy Swiss-Prot
Match: Y1278_PYRKO (DNA-binding protein TK1278 OS=Pyrococcus kodakaraensis GN=TK1278 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 2 
Query:   77 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDA-KREADERRQM--MLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 373
            ++E IR+R++ EL        Q+   + QKAQE+A KRE +   Q+  ++ +IL+ EARERL R+ LVKPE AR VE ++++  Q GQI E++ + +L  +L
Sbjct:    4 DIEEIRKRKLMEL--------QKKYLEQQKAQEEALKREMELEAQLEAIMRKILTPEARERLGRVKLVKPELARQVELLLVQLYQAGQIRERIDDAKLKRIL 97
The following BLAST results are available for this feature:
BLAST of CX295345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
Y1278_PYRKO9.231e-1141.18DNA-binding protein TK1278 OS=Pyrococcus kodakarae... [more]

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Properties
Property NameValue
Genbank descriptionC05071C03SK PhIFruit1 Citrus clementina cDNA clone C05071C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295345 ID=CX295345; Name=CX295345; organism=Citrus clementina; type=EST; length=637bp
GGGGAAGGAAGCAGAAACAGAGTTCAGAGTAGGCAGCGTTTGCTCATCGA
TCCATTCAAATCAAATGGCTGACCCTGAACTAGAAGCAATTAGACAAAGA
AGAATGCAAGAGCTCATGGCCCAACAAGGCGTGGGGAGTCAACAAAATTC
TGAGCAGCATCAGAAAGCTCAGGAAGATGCCAAGAGGGAGGCAGATGAAC
GGAGACAAATGATGCTTAGCCAGATTTTGTCAACCGAAGCACGTGAAAGA
CTTGCTCGAATTGCTTTGGTGAAACCCGAGAAGGCTAGAGGTGTTGAGGA
CATTATATTGAGATCTGCCCAAATGGGTCAGATAGTTGAGAAGGTTTCTG
AAGAGAGGCTCATATCATTGCTGGAACAGATTAACACCCAAACCACCAAA
CAGACCAAAGTCACAATCCAAAGGCGCCGGAGTGTTTTGGAAGATGATGA
TTAACCTTGTGTAATTTCTGGTCATCATGGTGTGATACGCAATGCTATTC
ATGGTTATTGAAATTATGATGTGCTTTTTCATTGTTATTGACGGTTCACC
GTTTTGACATTATCTACAGGGTTTGTGTTATTTATACTCAAATCTTTTCT
ATAGTTATGTATCGGTTATTTTACTAGTAATTAACTT
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