CX295347

Overview
NameCX295347
Unique NameCX295347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UDG_PSEAE (UDP-glucose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=udg PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.963e-27
Identity = 74/205 (36.10%), Postives = 108/205 (52.68%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-DRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDP 624
            G+A+ D   PDRV+IG  ET  G+     L+ +YA ++   +R+L      AE SK AANAFLA +IS +N M+ LC  TG ++  V   +G+D RIG  F+ A  G+GGSCF KD+  L+   E  G    ++  + V   N  QK      +          + +A+ G AFK  T D RE P++ + + LL    R+  +DP
Sbjct:  159 GSAVDDFRRPDRVIIGSAETQAGE----TLRQLYAPFLRNHERVLLMGRREAEFSKYAANAFLATKISFMNEMAGLCALTGVDIEDVRRGMGSDKRIGTHFIYAGCGYGGSCFPKDVRALIRSAEQQGYD--SQILRAVEARNARQKELLFETLGELFQGRWQGRTVALWGLAFKPGTDDLREAPSLVLLEALLRHGVRVRAHDP 357          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: Y1054_METJA (Uncharacterized protein MJ1054 OS=Methanocaldococcus jannaschii GN=MJ1054 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.035e-20
Identity = 61/193 (31.61%), Postives = 106/193 (54.92%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYI-----CECNGLPEVAEYW-KQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 570
            G A+ D FNP+RV++G  E    +K ++ +++VY ++  ++   + TN  +AEL K A+NAFLA +IS +N ++ L +   A++  +++A+G D RIG KFLNA +G+GGSCF  D   +++I      EC    E+ E   K  +KI  +   +   + +        N  +  L F   ++   T++ P +
Sbjct:  151 GIAVYDFFNPERVILGF-ENLNNKKPIEIMEEVYKYFKDKNIPFVITNWETAELIKYASNAFLATKISFINELAKLSDKVKADIKTISYAMGLDPRIGNKFLNAGIGYGGSCFHPD--EVLFIDRGRGLECITFKELFELEDKDNVKILSFDGEKLSLKKLKLASKRYYNDDLITLRFNLGREIKITKDHPVV 340          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: WECC_METMP (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis GN=wecC PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 59/208 (28.37%), Postives = 101/208 (48.56%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNT-VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVT 633
            G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I TT+  +AE+ KL  N +    I+  N  + +C+  G NV           R+    LN   G GG C   D   +V   + N     A++ +   ++ND   +   N V++ +    +   KI++ G  +K +  DTRE+P+ +V K LL + A +S YDP  +
Sbjct:  159 GKILKELVENDRI-IGGIN----KKSAEMAKEIYKSFV-EGQIYTTDSNTAEMVKLMENTYRDINIALANEFAKICDEIGVNVWDAIKIANKHPRVN--ILNPGPGVGGHCISIDPWFIVE--KTNN----AKFIRAARELNDNMPAYVCNSVLSELKKLGIEKPKISIFGATYKGNVEDTRESPSKNVIKMLLENGATVSTYDPHAS 352          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: WECC_META3 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=wecC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 60/206 (29.13%), Postives = 92/206 (44.66%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNT--VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDP 624
            G  +++L   DR  IGG      +K+ +  K++YA ++ E  +  T+  +AE+ KL  N F    I+  N  + +      NV           R+    LN   G GG C   D   +V      G  E AE  K+   +ND    ++V  ++   F    + N K+ + G  +K D  DTRETPA  +   LL +   +SIYDP
Sbjct:  164 GNILKELVENDRT-IGGIN----KKSAQLAKEIYASFI-EGNLYITDSTTAEMVKLMENTFRDVNIALANEFAKVSTELDINVWDAINLANKHPRVN--ILNPGPGVGGHCISIDPWFIV------GSSENAELIKKARNLND-DMPKYVASLIIKEFKEMGICNPKVGIFGITYKGDVEDTRETPARAIIDYLLQNDFEVSIYDP 354          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: ALGD_AZOVI (GDP-mannose 6-dehydrogenase OS=Azotobacter vinelandii GN=algD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 54/207 (26.09%), Postives = 100/207 (48.31%), Query Frame = 1
Query:   16 TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPK--FLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQV 630
            TAI+D   P   +IG  +   G++    L  +YA    +  I+   +  AE+ K   N + A +++  N +  + +A G +  +V   V  D+++     ++   + FGGSC  KD+  L Y      +   A     +++ N  Q  +  +     M +   ++K+A+LG +FK  T D RE+P +++ + L+G   +LSI+D  V
Sbjct:  163 TAIKDYNFPPMTVIGELDKASGRR----LASIYAEL--DAPIVRKGIAVAEMIKYTCNVWHATKVTFANEIGNIAKAAGVDGREVMEVVCMDNKLNLSQYYMRPGLAFGGSCLPKDVSALSYRAHLWDIE--APLISSLMRSNAAQVQKAYD-----MIDKHGSRKVALLGLSFKAGTDDLRESPQLELAEMLIGKGFKLSIFDSNV 356          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: ALGD_PSESH (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. phaseolicola GN=algD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 54/207 (26.09%), Postives = 94/207 (45.41%), Query Frame = 1
Query:   16 TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS--RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQV 630
            TAI+D   P   +IG  +   G      L+ +Y     +  I+  ++  AE+ K   N + A +++  N +  + +A G +  +V   V  D    +   ++     FGGSC  KD+  L Y    + L   A     +++ N  Q     + V +        +K+A+LG +FK  T D RE+P +++ + L+G    LSI+D  V
Sbjct:  163 TAIKDYDLPPMTVIGEFDKASGD----VLQSLYEEL--DAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMDVVCQDKALNLSQYYMRPGFAFGGSCLPKDVRALTY--RASSLDVEAPLLNSLMRSNTSQVQNAFDMVAS-----YDTRKVALLGLSFKAGTDDLRESPLVELAEMLIGKGFDLSIFDSNV 356          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: ALGD_PSEPK (GDP-mannose 6-dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=algD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 53/207 (25.60%), Postives = 92/207 (44.44%), Query Frame = 1
Query:   16 TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS--RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQV 630
            TAI+D   P   +IG  ++  G       +++ A       I+   +  AE+ K   N + A +++  N +  + +A G +  +V   V  D    +   ++     FGGSC  KD+  L Y      L   A     +++ N+ Q       + A        +K+A+LG +FK  T D RE+P +++ + L+G   +L IYD  V
Sbjct:  163 TAIKDYDQPPMTVIGELDSASGDILQALYEELDAP------IIRKPIEVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMDVVCQDKVLNLSQYYMRPGFAFGGSCLPKDVRALTY--RAASLDVRAPLLDSLMRSNESQVQNAFELIEAH-----DKRKVALLGLSFKAGTDDLRESPLVELAERLIGKGYQLDIYDENV 356          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UDG_ECO11 (UDP-glucose 6-dehydrogenase OS=Escherichia coli O111:H- GN=ugd PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 55/210 (26.19%), Postives = 89/210 (42.38%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQ 642
            G A+ D  +P R++IG R    G+ A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N  Q+   V  D RIG  + N S G+GG C  KD   L+     N           ++  N  +K    + ++A        K + V     K  + + R +    + K +      + IY+P + ED+
Sbjct:  146 GRALYDNLHPSRIVIGERSERAGRFAALLQEGAVKKDIPT---LFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESLGLNSRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL----ANYASVPNNIIGAIVDANRTRKDFIADSILAR-----KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGVPVIIYEPVMVEDE 343          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UDG5_ECOLX (UDP-glucose 6-dehydrogenase OS=Escherichia coli GN=kfiD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 55/211 (26.07%), Postives = 94/211 (44.55%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSR--FVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTED 639
            G A+ D  +P R++IG       + AV   +      +P   +L T+   AE  KL +N +LA R++  N + +  E+ G N  Q+   V  D RIG  + N S G+GG C  KD   L  +     +P      K +  I D  ++R  F+  V+      V    + V     K  + + R++  + + K +     ++ IY+P ++ D
Sbjct:  150 GRALYDNLHPSRIIIGECSERAERLAVLFQEGAIKQNIP---VLFTDSTEAEAIKLFSNTYLAMRVAFFNELDSYAESFGLNTRQIIDGVCLDPRIGNYYNNPSFGYGGYCLPKDTKQL--LANYQSVPN-----KLISAIVDANRTRKDFITNVILKHRPQV----VGVYRLIMKSGSDNFRDSSILGIIKRIKKKGVKVIIYEPLISGD 346          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: ALGD_PSESY (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. syringae GN=algD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 56/210 (26.67%), Postives = 97/210 (46.19%), Query Frame = 1
Query:   16 TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS--RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSN---KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQV 630
            TAI+D   P   +IG  +   G      L+ +Y     +  I+  ++  AE+ K   N + A +++  N +  + +A G +  +V   V  D    +   ++     FGGSC  KD+  L Y      L   A     +++ N  Q        V + F+ V++   +K+A+LG +FK  T D RE+P +++ + L+G    LSI+D  V
Sbjct:  163 TAIKDYDLPPMTVIGEFDKASGD----VLQSLYEEL--DAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMDVVCQDKALNLSQYYMRPGFAFGGSCLPKDVRALTY--RAGSLDVEAPLLNSLMRSNTSQ--------VQNAFDMVASYDARKVALLGLSFKAGTDDLRESPLVELAEMLIGKGFDLSIFDSNV 356          
The following BLAST results are available for this feature:
BLAST of CX295347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
UDG_PSEAE1.963e-2736.10UDP-glucose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
Y1054_METJA3.035e-2031.61Uncharacterized protein MJ1054 OS=Methanocaldococc... [more]
WECC_METMP3.593e-1328.37UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_META31.783e-1229.13UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
ALGD_AZOVI1.783e-1226.09GDP-mannose 6-dehydrogenase OS=Azotobacter vinelan... [more]
ALGD_PSESH6.776e-1226.09GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
ALGD_PSEPK6.776e-1225.60GDP-mannose 6-dehydrogenase OS=Pseudomonas putida ... [more]
UDG_ECO118.850e-1226.19UDP-glucose 6-dehydrogenase OS=Escherichia coli O1... [more]
UDG5_ECOLX8.850e-1226.07UDP-glucose 6-dehydrogenase OS=Escherichia coli GN... [more]
ALGD_PSESY1.156e-1126.67GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]

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Properties
Property NameValue
Genbank descriptionC05071C05SK PhIFruit1 Citrus clementina cDNA clone C05071C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295347 ID=CX295347; Name=CX295347; organism=Citrus clementina; type=EST; length=654bp
GTTTCTTGCTGAGGGACTGCAATACAGGATCTTTTTAACCCAGATCGGGT
CCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCGTCAAAGCCT
TGAAGGATGTGTATGCACACTGGGTCCCAGAAGACCGAATTTTGACCACC
AACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGCTTTCTTGGC
ACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCGAGGCAACTG
GAGCTAATGTCAGTCAGGTGGCATTTGCTGTTGGTACAGACTCTAGGATT
GGGCCCAAATTCTTGAATGCTAGTGTTGGGTTCGGTGGCTCCTGCTTCCA
GAAGGATATTTTGAATCTGGTTTACATCTGCGAGTGCAATGGCCTTCCAG
AGGTGGCTGAGTACTGGAAACAAGTCATTAAGATCAATGATTACCAGAAA
AGCCGTTTTGTGAACCGCGTAGTTGCCTCTATGTTCAACACGGTTTCAAA
CAAGAAGATTGCCGTTCTGGGATTTGCCTTCAAGAAGGATACCGGTGACA
CCAGAGAGACCCCAGCCATTGATGTCTGCAAGGGGCTTTTGGGAGACAAA
GCTCGGTTGAGCATATACGACCCACAGGTCACCGAGGACCAGATCCAGAG
GGAC
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