CX295347

Overview
NameCX295347
Unique NameCX295347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: ALGD_PSESM (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. tomato GN=algD PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 54/207 (26.09%), Postives = 93/207 (44.93%), Query Frame = 1
Query:   16 TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS--RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQV 630
            TAI+D   P   +IG  +   G      L+ +Y     +  I+  ++  AE+ K   N + A +++  N +  + +A G +  +V   V  D    +   ++     FGGSC  KD+  L Y      L   A     +++ N  Q     + V +        +K+A+LG +FK  T D RE+P +++ + L+G    LSI+D  V
Sbjct:  163 TAIKDYDLPPMTVIGEFDKASGD----VLQSLYEEL--DAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMDVVCQDKALNLSQYYMRPGFAFGGSCLPKDVRALTY--RAGSLDVDAPLLNSLMRSNTSQVQNAFDMVAS-----YDTRKVALLGLSFKAGTDDLRESPLVELAEMLIGKGFDLSIFDSNV 356          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: WECC_METM7 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=wecC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 59/206 (28.64%), Postives = 100/206 (48.54%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNT--VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDP 624
            G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I  T+  +AE+ KL  N +    I+  N  + +C+  G NV           R+    LN   G GG C   D   +V   + N     A++ +   ++ND   + +V + V S  N   +   KI++ G  +K +  DTRE+P+ +V K LL + A +S +DP
Sbjct:  159 GKILKELVENDRI-IGGIN----KKSAEMAKEIYKSFV-EGKIYITDSNTAEMVKLMENTYRDINIALANEFAKICDEIGVNVWDAIKIANKHPRVN--ILNPGPGVGGHCISIDPWFIVE--KTNN----AKFIRAARELNDNMPA-YVCKSVLSELNKLGIEKPKISIFGATYKGNVEDTRESPSKNVIKMLLENGATVSTFDP 349          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: EPSD2_RALSO (NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum GN=epsD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 52/193 (26.94%), Postives = 87/193 (45.08%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL 591
            G  +++L   DR++  G  TP   +A + L +++       R + T+  +AE+ KL  NAF    I+  N +S +C+  G NV ++        R+    L    G GG C   D   +V     +  PE A   +   ++ND  K  +V   V           IA  G +FK +  D RE+PAI++ + ++
Sbjct:  170 GHVLRELVENDRII--GGMTPRCSQAAQRLYELFVR----GRCIVTDARTAEMCKLTENAFRDVNIAFANELSMICDEIGVNVWELISVANRHPRV--NILQPGPGVGGHCIAVDPWFIV-----DAAPESARLIRTAREVND-AKPHYVLDRVKQAARRFKEPVIACFGLSFKANIDDLRESPAIEIVRTMV 348          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: EPSD1_RALSO (NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum GN=epsD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 52/193 (26.94%), Postives = 88/193 (45.60%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL 591
            G  +++L   DR++  G  TP+  +A + L +++       R + T+  +AE+ KL  NAF    I+  N +S +C+  G NV ++        R+    L    G GG C   D   +V     +  PE A   +   ++ND  K  +V   V           IA  G +FK +  D RE+PAI++ + ++
Sbjct:  170 GHVLRELVENDRII--GGMTPKCSEAAQRLYELFVR----GRCIVTDARTAEMCKLTENAFRDVNIAFANELSMICDEIGVNVWELISVANRHPRV--NILQPGPGVGGHCIAVDPWFIV-----DAAPESARLIRTAREVND-AKPHYVLDRVKQAARRFKEPVIACFGLSFKANIDDLRESPAIEIVQTMV 348          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: WECC_YERPE (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Yersinia pestis GN=wecC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 57/197 (28.93%), Postives = 88/197 (44.67%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTV-------SNKKIAVLGFAFKKDTGDTRETPAIDVCK 582
            G  + +L   DRV+  G  TP+      AL  ++     E   + TN  +AE+ KL  N+F    I+  N +S +C+  G NV ++        R+    L    G GG C   D   +V     +  P++A        +ND +    V+RV A++ + +       S  KIA  G AFK D  D RE+PA+ V +
Sbjct:  164 GQVMVELIQNDRVI--GGMTPKCSARASALYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICDEQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIV-----SQNPQLARLIHTARLVNDGKPLWVVDRVKAAVADCLAASDKRASEVKIACFGLAFKPDIDDLRESPAVGVAR 347          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: WECC_METVS (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=wecC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 55/205 (26.83%), Postives = 93/205 (45.37%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFN-TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDP 624
            G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I  T+  +AE+ KL  N +    I+  N  + +C+  G NV           R+    LN   G GG C   D   +V   + N     A++ +   ++ND       N +++ + N  +   K+ V G  +K +  DTRE+P+  V   L      +S YDP
Sbjct:  159 GKILKELVENDRI-IGGIN----KKSAEMAKEIYKSFV-EGKIYITDSNTAEMVKLMENTYRDINIALANEFAKICDEIGVNVWDAIKIANKHPRVN--ILNPGPGVGGHCISIDPWFIVE--KTNN----AKFIRSARELNDKMPYYVCNMIISELKNLNIEKPKVTVFGATYKGNVEDTRESPSKKVIDALAEKNIPVSTYDP 349          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: WECC_METM5 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=wecC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 56/208 (26.92%), Postives = 99/208 (47.60%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMF-NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVT 633
            G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I  T+  +AE+ KL  N +    I+  N  + +C+  G NV           R+    LN   G GG C   D   +V   + N     A++ +   ++ND   +     V++ +  + +   KI+V G  +K +  DTRE+P+ +V + LL +   +S +DP  T
Sbjct:  159 GKILKELVENDRI-IGGIN----KKSAEMAKEIYKSFV-EGKIYITDSNTAEMVKLMENTYRDINIALANEFAKICDEIGVNVWDAIKIANKHPRVN--ILNPGPGVGGHCISIDPWFIVE--KTNN----AKFIRAARELNDNMPAYVCKSVLSELKKHGIKKPKISVFGATYKGNVEDTRESPSKNVIEMLLKNGVTVSTFDPHAT 352          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UDG_SALTY (UDP-glucose 6-dehydrogenase OS=Salmonella typhimurium GN=udg PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 52/209 (24.88%), Postives = 87/209 (41.63%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTED 639
            G A+ D   P R++IG +     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E  G N  Q+   V  D RIG  + N S G+GG C  KD   L  +     +P        +++ N  +K    + ++A        K + +     K  + + R +    + K +      + IY+P + ED
Sbjct:  146 GKALYDNLYPSRIVIGEQSERAREFAALLQEGAIKQEIPT---LFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAETLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQL--LANYQSVPN--NIISAIVEANRTRKDFIADAILAR-----KPKVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMEED 342          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UDG_ECOLI (UDP-glucose 6-dehydrogenase OS=Escherichia coli (strain K12) GN=ugd PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11
Identity = 53/209 (25.36%), Postives = 89/209 (42.58%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTED 639
            G A+ D  +P R++IG R     + A    +      +P   +L T+   AE  KL AN +LA R++  N + +  E+ G N  Q+   V  D RIG  + N S G+GG C  KD   L  +     +P        +  I D  ++R     +A    +   + + +     K  + + R +    + K +      + IY+P + ED
Sbjct:  146 GKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---MLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNSRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQL--LANYQSVPN-----NLISAIVDANRTR--KDFIADAILSRKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKED 342          
BLAST of CX295347 vs. ExPASy Swiss-Prot
Match: UDG_ECOL6 (UDP-glucose 6-dehydrogenase OS=Escherichia coli O6 GN=ugd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11
Identity = 53/209 (25.36%), Postives = 88/209 (42.11%), Query Frame = 1
Query:   13 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTED 639
            G A+ D  +P R++IG R     + A    +      +P    L T+   AE  KL AN +LA R++  N + +  E+ G N  Q+   V  D RIG  + N S G+GG C  KD   L  +     +P        +  I D  ++R     +A    +   + + +     K  + + R +    + K +      + IY+P + ED
Sbjct:  146 GKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPT---LFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQL--LANYQSVPN-----NLISAIVDANRTR--KDFIADAILSRKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKED 342          
The following BLAST results are available for this feature:
BLAST of CX295347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ALGD_PSESM1.156e-1126.09GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
WECC_METM71.510e-1128.64UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
EPSD2_RALSO1.972e-1126.94NDP-N-acetyl-D-galactosaminuronic acid dehydrogena... [more]
EPSD1_RALSO1.972e-1126.94NDP-N-acetyl-D-galactosaminuronic acid dehydrogena... [more]
WECC_YERPE2.575e-1128.93UDP-N-acetyl-D-mannosamine dehydrogenase OS=Yersin... [more]
WECC_METVS3.363e-1126.83UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_METM54.392e-1126.92UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
UDG_SALTY4.392e-1124.88UDP-glucose 6-dehydrogenase OS=Salmonella typhimur... [more]
UDG_ECOLI7.492e-1125.36UDP-glucose 6-dehydrogenase OS=Escherichia coli (s... [more]
UDG_ECOL67.492e-1125.36UDP-glucose 6-dehydrogenase OS=Escherichia coli O6... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05071C05SK PhIFruit1 Citrus clementina cDNA clone C05071C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295347 ID=CX295347; Name=CX295347; organism=Citrus clementina; type=EST; length=654bp
GTTTCTTGCTGAGGGACTGCAATACAGGATCTTTTTAACCCAGATCGGGT
CCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCGTCAAAGCCT
TGAAGGATGTGTATGCACACTGGGTCCCAGAAGACCGAATTTTGACCACC
AACCTGTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGCTTTCTTGGC
ACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCGAGGCAACTG
GAGCTAATGTCAGTCAGGTGGCATTTGCTGTTGGTACAGACTCTAGGATT
GGGCCCAAATTCTTGAATGCTAGTGTTGGGTTCGGTGGCTCCTGCTTCCA
GAAGGATATTTTGAATCTGGTTTACATCTGCGAGTGCAATGGCCTTCCAG
AGGTGGCTGAGTACTGGAAACAAGTCATTAAGATCAATGATTACCAGAAA
AGCCGTTTTGTGAACCGCGTAGTTGCCTCTATGTTCAACACGGTTTCAAA
CAAGAAGATTGCCGTTCTGGGATTTGCCTTCAAGAAGGATACCGGTGACA
CCAGAGAGACCCCAGCCATTGATGTCTGCAAGGGGCTTTTGGGAGACAAA
GCTCGGTTGAGCATATACGACCCACAGGTCACCGAGGACCAGATCCAGAG
GGAC
back to top