CX295354

Overview
NameCX295354
Unique NameCX295354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14840 contig Ccv1_Contig14840:73..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.197e-67
Identity = 121/205 (59.02%), Postives = 162/205 (79.02%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF+    PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + T R++  K+ L  + IDF GHALAL+R D YL++P  +T
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.197e-67
Identity = 121/204 (59.31%), Postives = 157/204 (76.96%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            MDEEYDVIVLGTGL EC+LSGLLSVDG KVLH+DRNDYYG +S+SLNL QL+  FR  EQ P  LG  RD+ VD++PKF++ANG L  +LI+TDVT+Y+ FK + GS+VY  G++ KVP  +MEALKSPLM +FEKRRA+KF  +V +Y E+DP T++ +++ R +   +  K+GL   T DFIGHA+AL+ DD YL +PA +T
Sbjct:    1 MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFRPGEQRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSGTQDFIGHAMALYLDDAYLKKPARET 204          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.666e-67
Identity = 119/205 (58.05%), Postives = 164/205 (80.00%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+  ++ L+KRF+   QPPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + + R++  K+ L  + IDF GH+LAL+R D YL++P  +T
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPGQPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQPCCET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.666e-67
Identity = 120/205 (58.54%), Postives = 162/205 (79.02%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KR++    PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + T R++  K+ L  + IDF GHALAL+R D YL++P  +T
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRYKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.666e-67
Identity = 119/205 (58.05%), Postives = 164/205 (80.00%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+  ++ L+KRF+   QPPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + + R++  K+ L  + IDF GH+LAL+R D YL++P  +T
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPGQPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQPCCET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.257e-66
Identity = 119/205 (58.05%), Postives = 161/205 (78.54%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDT 676
            M+EEYDVIVLGTGL ECILSG+++V+G KVLHMDRN YYGGES+S+  ++ L+KRF+    PPA +G  RD+N+D+IPKF++ANG LV++L++T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  +    E+  K+ L  + IDF GHALAL+R D YL++P  +T
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMTVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGAPPASMGRGRDWNLDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTAIGEVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCET 205          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.048e-63
Identity = 114/205 (55.61%), Postives = 159/205 (77.56%), Query Frame = 2
Query:   65 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN----EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPA 667
            +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N    E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL ++T +FIGHA+AL  +D YL +PA
Sbjct:    6 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPA 210          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: RABEP_DROME (Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 50/180 (27.78%), Postives = 87/180 (48.33%), Query Frame = 2
Query:   62 NMDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHL---------------------------GSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN 520
            ++ E++D++V+GTG  E  ++   S  G  VLH+D N+YYG   SS ++  L  R     +P + L                             SR +++D+ P+ + A G LV++LI +++ +Y  F+AVD   + + G++  VP +  +   +  + I EKR   KF     DY E+
Sbjct:    4 DLPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLCPRILYAAGELVQLLIKSNICRYAEFRAVDHVCMRHNGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDYGED 183          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: RAEP_YEAST (Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae GN=MRS6 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 49/166 (29.52%), Postives = 83/166 (50.00%), Query Frame = 2
Query:   71 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLG------------------SSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD 514
            ++ DV++ GTG+ E +L+  L+  G  VLH+D+NDYYG  S++L + Q+ KR+  NE     +                   SSRD+ +D+ PK + A   L+ +LI + V +YL F+++     Y      K+  T  E      + +  KR   KF  +V +++
Sbjct:   45 DKVDVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQI-KRW-VNEVNEGSVSCYKNAKLYVSTLIGSGKYSSRDFGIDLSPKILFAKSDLLSILIKSRVHQYLEFQSLSNFHTYENDCFEKLTNTKQEIFTDQNLPLMTKRNLMKFIKFVLNWE 208          
BLAST of CX295354 vs. ExPASy Swiss-Prot
Match: RAEP_CANAL (Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 51/161 (31.68%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   80 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWK-----------RFR-------GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPA-TDMEALKSPLMGIFEKRRARKFFIYV 502
            DV+++GTGL+E IL+  LS  G +VLH+D N YYG   S+L + QL K           +F+       G +Q   +  +S+DY +D+ PK +     L+ +LI + V +YL F+++    V+ N     KV A T  +      + +  KR   KF  ++
Sbjct:    5 DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQFQDAQIYIPGGKQSNQY--TSKDYGIDLTPKIMFCQSDLLSLLIKSRVYRYLEFQSLSNFHVFENDDFQQKVNATTKQDIFTDKSLSLMTKRYLMKFLKFL 163          
The following BLAST results are available for this feature:
BLAST of CX295354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GDIB_HUMAN1.197e-6759.02Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDI1_SCHPO1.197e-6759.31Probable secretory pathway GDP dissociation inhibi... [more]
GDIB_RAT2.666e-6758.05Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_PONAB2.666e-6758.54Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]
GDIB_MOUSE2.666e-6758.05Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]
GDIB_CANFA2.257e-6658.05Rab GDP dissociation inhibitor beta OS=Canis famil... [more]
GDI1_YEAST1.048e-6355.61Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]
RABEP_DROME8.139e-1627.78Rab proteins geranylgeranyltransferase component A... [more]
RAEP_YEAST2.005e-1429.52Rab proteins geranylgeranyltransferase component A... [more]
RAEP_CANAL1.876e-1231.68Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionC05071C12SK PhIFruit1 Citrus clementina cDNA clone C05071C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295354 ID=CX295354; Name=CX295354; organism=Citrus clementina; type=EST; length=678bp
GCTCGTGCCGATTCGGCACGAGGCTCTGAATCAGAAATCAAAAATCAAAA
ATCAAGTCATCAACATGGATGAAGAGTATGATGTCATCGTCTTGGGAACC
GGTCTCAAGGAATGCATCCTCAGTGGTCTCCTCTCTGTTGATGGCCTCAA
GGTCCTGCACATGGACAGGAATGATTATTATGGAGGAGAGTCATCATCGC
TCAATCTCATTCAGCTCTGGAAGAGATTTAGGGGAAATGAACAACCTCCT
GCTCACTTGGGCTCTAGTAGGGATTATAATGTTGACATGATCCCGAAGTT
TATAATTGCAAATGGAGCTCTTGTTCGTGTCCTCATTCATACTGATGTTA
CAAAGTATCTGTACTTCAAAGCTGTGGATGGCAGCTTCGTCTATAATAAA
GGAAAGGTCCATAAGGTGCCAGCAACTGATATGGAAGCGCTCAAATCTCC
ACTCATGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTTTTTCATTTATG
TTCAAGATTATGATGAAAATGATCCCAAAACACACGAGGGAATGGACTTG
ACCAGGGTGACCACTAGAGAGTTGATTGCGAAGTATGGTCTTGATGACAA
CACTATTGACTTCATTGGTCATGCATTGGCACTTCATAGAGATGATCGTT
ACTTAAACGAACCTGCTCTTGATACAGT
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