CX295411

Overview
NameCX295411
Unique NameCX295411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295411 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.021e-31
Identity = 76/160 (47.50%), Postives = 90/160 (56.25%), Query Frame = 2
Query:  101 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 580
            T    +QD CVA     DG    G  CK P +    DF +SGLG  GNT N      T A   Q PG+N LGIS  R+D  P G  P H HP ASE+ LV++GT+  GFV SD   NT   K L KGD+ VFPQGL+HFQ N G T A A+ + +S  PG
Sbjct:   15 TSHASVQDFCVADYKAPDGPA--GYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASD---NTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPG 169          
BLAST of CX295411 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30
Identity = 82/191 (42.93%), Postives = 101/191 (52.88%), Query Frame = 2
Query:  104 DPGHLQDVCV---AINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDY-APYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDP 664
            DP  +QD CV       P +   +    C+ P    A DF FSG+   GN +   G         Q PGL+TLG+S  R D  A  G  PPH HPRA+E  LVL G +Y GFV S      L AKVL +G+V VFP+ ++HFQ N+G T A  Y A NS+ PG V I  TVFG+   I    L +AF L P
Sbjct:   24 DPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDS---GGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGS--GIREAVLERAFGLTP 209          
BLAST of CX295411 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30
Identity = 75/155 (48.39%), Postives = 89/155 (57.42%), Query Frame = 2
Query:  116 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 580
            +QD CVA     DG    G  CK P      DF +SGLG  GNT N +    T A   Q PG+N LGIS  R+D  P G  P H HP ASE+ LV++GT+  GFV SD   NT   K L KGD+ VFPQGL+HFQ N G T A A+ + +S  PG
Sbjct:   20 VQDFCVADYKAPDGPA--GYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASD---NTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPG 169          
BLAST of CX295411 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 83/187 (44.39%), Postives = 101/187 (54.01%), Query Frame = 2
Query:  116 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVK 676
            +QD CVA  + K      G  C  P   +A DF FSGLG PGNT N +    T A   Q PGLN LG+S  R+D AP G  P H HP ASE+  VL G++  GFV+S    N +  + L  G V VFPQGL+HFQ N GK++A+A    NS  PG + I D    AN       +G  F LD   VK
Sbjct:   19 VQDFCVA--NLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSS---ANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPG-LQILDFALFANSLPTELVVGTTF-LDATTVK 198          
BLAST of CX295411 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.881e-29
Identity = 73/155 (47.10%), Postives = 91/155 (58.71%), Query Frame = 2
Query:  116 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 580
            +QD CVA     +G    G  CK P   +  DF FSGLG  GNT+N +    T A V Q PG+N LGIS  R+D A  G  P H HP ASE+ +V +GT+  GFV SD   NT   + L KGD+ VFPQGL+HFQ N G+  A A+++  S  PG
Sbjct:   25 VQDFCVADLAAPEGPA--GFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASD---NTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPG 174          
BLAST of CX295411 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.095e-28
Identity = 70/155 (45.16%), Postives = 90/155 (58.06%), Query Frame = 2
Query:  116 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 580
            +QD CVA  DPK     +G  CK+P      DF F+GLG  GNT+N +    T A      G+N LG+S  R+D A  G  P H HP ASE+ +V++GT+  GF++S    N +  K LN+GD  VFPQGL+HFQ N GK  A A+ A  S  PG
Sbjct:   22 VQDFCVA--DPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS---ANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPG 171          
BLAST of CX295411 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.430e-28
Identity = 71/155 (45.81%), Postives = 90/155 (58.06%), Query Frame = 2
Query:  116 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 580
            +QD CVA  DPK     +G  CK+P      DF FSGLGK GNT+N +    T A      GLN L +S  R+D A  G  P H HP ASE+ +V++GT+  GF++S    N +  K L++GD  VFPQGL+HFQ N GK  A A+ A  S  PG
Sbjct:   22 VQDFCVA--DPKGPQNPSGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS---ANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPG 171          
BLAST of CX295411 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.186e-28
Identity = 72/169 (42.60%), Postives = 97/169 (57.40%), Query Frame = 2
Query:  104 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFG 610
            D  ++QD C      +   F+NG  CK+P    A+DF  + L + G+T N L  + T     + PGLNTLG+S  R D    G  P H HPR+SE+  V++G ++ GFV +   NN +   VL KGDVFVFP+GL+HF  + G   A A+S  NSQ PG V I + VFG
Sbjct:   19 DSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDT---NNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNIGE-VFG 183          
BLAST of CX295411 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28
Identity = 80/187 (42.78%), Postives = 102/187 (54.55%), Query Frame = 2
Query:  116 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVK 676
            +QD CVA  + K      G  C  P   +A DF FS LG PGNT N +    T   V Q P LN LGIS  R+D AP G  P H HP ASE+  VL+G++  GF++S    N++  + L  G V VFPQGL+HFQ N GKT AAA    +S  PG + I D    AN +++ + +     L P  VK
Sbjct:   19 VQDFCVA--NLKRAETPAGYPCIRPIHVKASDFVFS-LGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISS---ANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPG-LQILDFALFAN-TLSTELVSATTFLPPATVK 197          
BLAST of CX295411 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.025e-26
Identity = 70/175 (40.00%), Postives = 89/175 (50.86%), Query Frame = 2
Query:  101 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSI 625
            +D   LQDVC      +  +F+NG FCK P    A DF    L   G+  N +          + PGLNTLGIS  R D A  G   PH HPRASE+  V  G++  GF  +      L  K L +GDVF+FP+GL+HF  N G   A  +S LNSQ PG V I   +F  +  +
Sbjct:   23 SDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDT---KGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEV 194          
The following BLAST results are available for this feature:
BLAST of CX295411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
AB19B_PRUPE4.021e-3147.50Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GL24_ORYSJ1.995e-3042.93Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
AB19A_PRUPE1.995e-3048.39Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL31_ARATH7.583e-3044.39Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
ABP20_PRUPE2.881e-2947.10Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL33_ARATH1.095e-2845.16Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GLP1_SINAL1.430e-2845.81Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GL34_ARATH3.186e-2842.60Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GLP1_BRANA7.097e-2842.78Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL111_ORYSJ1.025e-2640.00Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionC05071H10SK PhIFruit1 Citrus clementina cDNA clone C05071H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295411 ID=CX295411; Name=CX295411; organism=Citrus clementina; type=EST; length=678bp
GTTTGAGATAGGCACATCCTGTGACTTAATCACCATGAAGGTAATTCAAT
TTCTTATAGGTTTTGCCCTCTTGGCTTTGGCTTCTTCTTTGGCCTCTGCC
ACTGACCCTGGCCATCTTCAAGATGTCTGTGTAGCCATCAATGACCCCAA
GGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGA
GAGCAGAAGATTTCTTCTTCTCAGGGCTAGGCAAGCCTGGAAACACAGCA
AATCGACTTGGTGTTGATGAAACAGATGCAAATGTTGAGCAAATTCCAGG
ACTCAACACCCTTGGCATATCAGCATTCCGTATTGACTATGCACCATATG
GCCAAAGGCCACCTCACATTCACCCCCGTGCCAGCGAAATCTTCTTAGTC
CTGGAAGGAACTCTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAA
CACACTCATCGCAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCAC
AAGGTTTGATTCACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCC
TATTCTGCTCTAAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACAC
AGTCTTTGGAGCCAATCCTTCAATCAATCCCGATTTTCTTGGCAAGGCAT
TCCAGTTGGACCCAAAGATAGTGAAAGA
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