CX295421

Overview
NameCX295421
Unique NameCX295421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.654e-40
Identity = 75/141 (53.19%), Postives = 105/141 (74.47%), Query Frame = 3
Query:    3 SCRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +C +  +E+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATNR ++LDPALLRPGR+DRK+EF LPD++ R +IF+IHT  M    D+  E         +GADI+++CTEAG+ A+R RR  VT  DF
Sbjct:  262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDF 402          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.654e-40
Identity = 76/141 (53.90%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SCRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +C I  +E+DA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV++ATNR ++LDPALLRPGR+DRK+EF LPD++ R  IF IH   M+ A D+  E         +GADI+++CTEAG+ A+R RR  V+  DF
Sbjct:  264 ACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDF 404          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.809e-39
Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SCRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +C I  +EIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV++ATNR ++LDPAL+RPGR+DRKIEF LPD++ R  IF+IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  269 ACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDF 409          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 161.384 bits (407), Expect = 3.668e-39
Identity = 75/135 (55.56%), Postives = 101/135 (74.81%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EID++G+ R +   GG+ E+QRTMLELLNQLDGF++  ++K+I+ATNR++ LDPALLRPGRIDRKIEFP P +  R  I +IH+ +M L   +NL +     +  SGAD+K +CTEAG+ ALRERR+ VT  DF
Sbjct:  248 DEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDF 382          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 3.668e-39
Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SCRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +C I  +EIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV++ATNR ++LDPAL+RPGR+DRKIEF LPD++ R  IF+IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  269 ACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDF 409          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 161.384 bits (407), Expect = 3.668e-39
Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SCRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +C I  +EIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV++ATNR ++LDPAL+RPGR+DRKIEF LPD++ R  IF+IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  269 ACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDF 409          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 3.668e-39
Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SCRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +C I  +EIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV++ATNR ++LDPAL+RPGR+DRKIEF LPD++ R  IF+IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  269 ACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDF 409          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 3.668e-39
Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SCRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +C I  +EIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV++ATNR ++LDPAL+RPGR+DRKIEF LPD++ R  IF+IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  269 ACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDF 409          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 3.668e-39
Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SCRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +C I  +EIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV++ATNR ++LDPAL+RPGR+DRKIEF LPD++ R  IF+IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  269 ACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDF 409          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.258e-39
Identity = 80/135 (59.26%), Postives = 102/135 (75.56%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EIDA+  KR DA +GG+RE+QRT+++LL ++DGFD+RGDVK+I ATNR + LDPA+LRPGR DR IE P PD K R  I +IHT +M LA+DVNLEE     +   GA++KAICTEAG+ A+RE R  VT  DF
Sbjct:  270 DEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDF 404          
The following BLAST results are available for this feature:
BLAST of CX295421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
PRS7_ORYSJ9.654e-4053.1926S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS7_DICDI9.654e-4053.9026S protease regulatory subunit 7 OS=Dictyostelium... [more]
PRS7_XENLA2.809e-3953.1926S protease regulatory subunit 7 OS=Xenopus laevi... [more]
PRS8_YEAST3.668e-3955.5626S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS7_RAT3.668e-3953.1926S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS7_MOUSE3.668e-3953.1926S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA3.668e-3953.1926S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN3.668e-3953.1926S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN3.668e-3953.1926S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PSMR_METJA6.258e-3959.26Proteasome-activating nucleotidase OS=Methanocaldo... [more]

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Properties
Property NameValue
Genbank descriptionC05072A08SK PhIFruit1 Citrus clementina cDNA clone C05072A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295421 ID=CX295421; Name=CX295421; organism=Citrus clementina; type=EST; length=645bp
GCTCGTGCCGAATTCGGCACGAGGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GTTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCCGATATCAAGACTAG
GAGACGTATTTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTTA
CTGTTCTGCATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCTTCTTTTGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAGCCGCTTTGG
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