CX295421

Overview
NameCX295421
Unique NameCX295421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.036e-38
Identity = 76/135 (56.30%), Postives = 101/135 (74.81%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVI+ATNRI+ LD ALLRPGRIDRKIEFP P+ + R  I +IH+ +M L   +NL +        SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  249 DEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 383          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.434e-37
Identity = 76/136 (55.88%), Postives = 101/136 (74.26%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EID++G+ R D+  G G+ E+QRTMLELLNQLDGF++  ++KVI+ATNRI+ LDPALLRPGRIDRKIEFP P  + R  I +IH+  M L   ++L+      +  SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  245 DEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDF 380          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.484e-37
Identity = 76/135 (56.30%), Postives = 101/135 (74.81%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EIDAV  KR  + + G+RE+QRT+++LL +LDGF+SRG+V ++ ATNR + LDPALLRPGR DR IE PLP+   RR I +IHTS M LA++V++E      D  SGAD+KAICTEAG+ A+R+ R +VT  DF
Sbjct:  251 DEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADF 385          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.484e-37
Identity = 74/141 (52.48%), Postives = 101/141 (71.63%), Query Frame = 3
Query:    3 SCRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +C I  +EIDAVG  R+D  +GG+ E+QRTMLEL+ QLDGFD RG++KV+ ATNR  +LDPALLRPGRIDRK+EF LPD++ R  IF+IH+  M++   +  E         +GA+++++CTEAG+ A+R RR   T  DF
Sbjct:  303 ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDF 443          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.649e-37
Identity = 76/134 (56.72%), Postives = 96/134 (71.64%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            +EIDA+G KR D  + GEREIQRT+++LL +LDGFD   +VK+I ATNRI+ LDPALLRPGR DR IE PLPD K R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  234 DEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRDGRNKVTMND 367          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.704e-36
Identity = 78/135 (57.78%), Postives = 98/135 (72.59%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EIDA+G KR D  +GGERE+ RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I ++HT RM L  +V+L       +  SGAD+KAI TEAG+ A+RERR  VT  DF
Sbjct:  240 DEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KNVDLRVIAEITEGASGADLKAIATEAGMFAIRERRTYVTQEDF 373          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.704e-36
Identity = 70/135 (51.85%), Postives = 99/135 (73.33%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EIDA+ +KR D+ + G+ E+QRTM++LL+++DGFD RGD+++I ATNR + LD A+LRPGR DR IE P P++  R +IF+IHT  M +AD V+  E      + SGAD+KAICTEAG+ A+R+ R +V   DF
Sbjct:  249 DEIDAIASKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVADSVDFGELAADTGDLSGADVKAICTEAGMFAIRDDRTEVRMQDF 383          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.704e-36
Identity = 78/135 (57.78%), Postives = 99/135 (73.33%), Query Frame = 3
Query:   21 EEIDAVGTKRYDA-HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            +EID++G+ R +    GG+ E+QRTMLELLNQLDGF+S  ++K+I+ATNRI+ LDPALLRPGRIDRKIEFP P+   R  I +IH+ RM L   +NL +        SGA+IKA CTEAG+ ALRERR+ VT  D
Sbjct:  256 DEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFPNPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEAGMFALRERRVHVTQED 390          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.704e-36
Identity = 73/141 (51.77%), Postives = 101/141 (71.63%), Query Frame = 3
Query:    3 SCRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +C +  +EIDA+G  R+D   G + E+QRTMLE+L QLDGFD+RG++KV++ATNR + LDPALLRPGR+DRK+EF LPD++ R +IF+IHT  M+   D+  E         +GADI+++C EAG+ A+  RR  VT  DF
Sbjct:  299 ACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDF 439          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.226e-36
Identity = 78/135 (57.78%), Postives = 97/135 (71.85%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EIDA+G KR D  +GGERE+ RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I ++HT RM L   V+L       +  SGAD+KAI TEAG+ A+RERR  VT  DF
Sbjct:  240 DEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KGVDLRAIAEMTEGASGADLKAIATEAGMFAIRERRTYVTQEDF 373          
The following BLAST results are available for this feature:
BLAST of CX295421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
PRS8_BOVIN9.036e-3856.3026S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS8_SCHPO3.434e-3755.8826S protease regulatory subunit 8 homolog OS=Schiz... [more]
PSMR_METTH4.484e-3756.30Proteasome-activating nucleotidase OS=Methanobacte... [more]
PRS7_YEAST4.484e-3752.4826S protease regulatory subunit 7 homolog OS=Sacch... [more]
PSMR_SULSO7.649e-3756.72Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_PYRAB1.704e-3657.78Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR2_HALSA1.704e-3651.85Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS8_NAEFO1.704e-3657.7826S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS7B_ARATH1.704e-3651.7726S protease regulatory subunit 7 homolog B OS=Ara... [more]
PSMR_PYRHO2.226e-3657.78Proteasome-activating nucleotidase OS=Pyrococcus h... [more]

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Properties
Property NameValue
Genbank descriptionC05072A08SK PhIFruit1 Citrus clementina cDNA clone C05072A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295421 ID=CX295421; Name=CX295421; organism=Citrus clementina; type=EST; length=645bp
GCTCGTGCCGAATTCGGCACGAGGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GTTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCCGATATCAAGACTAG
GAGACGTATTTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTTA
CTGTTCTGCATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCTTCTTTTGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAGCCGCTTTGG
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