CX295421

Overview
NameCX295421
Unique NameCX295421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12850 contig Ccv1_Contig12850:930..1572. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.226e-36
Identity = 76/135 (56.30%), Postives = 101/135 (74.81%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVI+ATNRI+ LD ALLRPGRIDRKIEFP P+ + R  I +IH+ +M L   +NL +        SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  244 DEIDSIGS-RLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 377          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.907e-36
Identity = 76/135 (56.30%), Postives = 99/135 (73.33%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EIDA+G +R    + G+RE+QRT+ +LL ++DGFD   D+KVI ATNR + LDPALLRPGR DR I+ PLPD + R  IF+IHT  M LA+DV+L++     +  SGADIKAICTEAG++A+RE R  VT  DF
Sbjct:  279 DEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIREDRDIVTMDDF 413          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.907e-36
Identity = 75/136 (55.15%), Postives = 105/136 (77.21%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EID++G+ R ++ SG G+ E+QRTMLELLNQLDGF++   +KV++ATNRI+ LD ALLRPGRIDRKIEFP P+ ++R  I +IH+ +M L   ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT  DF
Sbjct:  261 DEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDF 396          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.907e-36
Identity = 75/136 (55.15%), Postives = 105/136 (77.21%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EID++G+ R ++ SG G+ E+QRTMLELLNQLDGF++   +KV++ATNRI+ LD ALLRPGRIDRKIEFP P+ ++R  I +IH+ +M L   ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT  DF
Sbjct:  261 DEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDF 396          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.796e-36
Identity = 78/135 (57.78%), Postives = 97/135 (71.85%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EIDA+G KR D  +GGERE+ RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I ++HT RM L   V+L       +  SGAD+KAI TEAG+ A+RERR  VT  DF
Sbjct:  237 DEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKLR-GVDLRLIAELTEGASGADLKAIATEAGMFAIRERRTYVTQEDF 370          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.796e-36
Identity = 74/140 (52.86%), Postives = 100/140 (71.43%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            C I  +EIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+I+ATNR + LDPALLRPGR+DRKIE PLP+ ++R  I +IH S +    +++ E  V   + F+GAD++ ICTEAG+ A+R  R  V H DF
Sbjct:  234 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDF 373          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.958e-36
Identity = 77/140 (55.00%), Postives = 100/140 (71.43%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            C I  +EIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR + LDPA+LRPGR DR IE   PD   R  IF+IHT +M +   V+L E     +   GADIKA+CTEAG+ A+RE R  VT  DF
Sbjct:  243 CIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNI-KSVDLREIAKMAENMVGADIKAVCTEAGMFAIREGREYVTTKDF 381          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.958e-36
Identity = 76/136 (55.88%), Postives = 103/136 (75.74%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGG-EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EID++G+ R ++ SGG + E+QRTMLELLNQLDGF+S  ++KV++ TNRI+ LDPALLRPGRIDRKIEFP P    R  I +IH+ +M L   +NL++     +  SGA++KA+CTEAG+ ALRERR+ V+  DF
Sbjct:  245 DEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQEDF 380          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.958e-36
Identity = 73/140 (52.14%), Postives = 102/140 (72.86%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            C +  +EIDA+G +R+   +  +REIQRT++ELLNQLDGFDS G VKVI+ATNR ++LDPALLRPGR+DRKIE  LP+ ++R  I +IH++++T   +++ E  V   D FS AD++ +CTEAG+ A+R  R  V   DF
Sbjct:  245 CIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDF 384          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.475e-36
Identity = 71/141 (50.35%), Postives = 98/141 (69.50%), Query Frame = 3
Query:    3 SCRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +C I  +EIDA+G  R+D  +GG+ E+QRTMLEL+ QLDGFD RG++KV+ ATNR  +LD AL+RPGRIDRK+EF LPD++ R  I +IH   M +  D+  E         +GA+++++CTEAG+ A+R RR   T  DF
Sbjct:  273 ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDF 413          
The following BLAST results are available for this feature:
BLAST of CX295421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
PRS8_XENLA2.226e-3656.3026S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PSMR_METKA2.907e-3656.30Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PRS8B_ARATH2.907e-3655.1526S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS8A_ARATH2.907e-3655.1526S protease regulatory subunit 8 homolog A OS=Ara... [more]
PSMR_PYRFU3.796e-3657.78Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PS10B_ARATH3.796e-3652.8626S protease regulatory subunit S10B homolog B OS=... [more]
PSMR_METVS4.958e-3655.00Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS8_DICDI4.958e-3655.8826S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS10_CAEEL4.958e-3652.14Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS7_SCHPO6.475e-3650.3526S protease regulatory subunit 7 homolog OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionC05072A08SK PhIFruit1 Citrus clementina cDNA clone C05072A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295421 ID=CX295421; Name=CX295421; organism=Citrus clementina; type=EST; length=645bp
GCTCGTGCCGAATTCGGCACGAGGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GTTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCCGATATCAAGACTAG
GAGACGTATTTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTTA
CTGTTCTGCATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCTTCTTTTGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAGCCGCTTTGG
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