CX295421

Overview
NameCX295421
Unique NameCX295421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.457e-36
Identity = 76/135 (56.30%), Postives = 98/135 (72.59%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EIDA+G KR D  +GGERE+ RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I ++HT +M L  +V+L       +  SGAD+KAI TEAG+ A+R+RR  VT  DF
Sbjct:  238 DEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNLR-NVDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDF 371          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.457e-36
Identity = 74/134 (55.22%), Postives = 96/134 (71.64%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            +EIDA+G KR D  + GEREIQRT+++LL +LDGF+   +VK+I ATNRI+ LDPALLRPGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  234 DEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.457e-36
Identity = 74/134 (55.22%), Postives = 96/134 (71.64%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            +EIDA+G KR D  + GEREIQRT+++LL +LDGF+   +VK+I ATNRI+ LDPALLRPGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  234 DEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.457e-36
Identity = 74/134 (55.22%), Postives = 96/134 (71.64%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            +EIDA+G KR D  + GEREIQRT+++LL +LDGF+   +VK+I ATNRI+ LDPALLRPGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  234 DEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.457e-36
Identity = 74/134 (55.22%), Postives = 96/134 (71.64%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            +EIDA+G KR D  + GEREIQRT+++LL +LDGF+   +VK+I ATNRI+ LDPALLRPGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  234 DEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.457e-36
Identity = 74/134 (55.22%), Postives = 96/134 (71.64%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            +EIDA+G KR D  + GEREIQRT+++LL +LDGF+   +VK+I ATNRI+ LDPALLRPGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  234 DEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.457e-36
Identity = 74/134 (55.22%), Postives = 96/134 (71.64%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            +EIDA+G KR D  + GEREIQRT+++LL +LDGF+   +VK+I ATNRI+ LDPALLRPGR DR IE PLPD + R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  234 DEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKD 367          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.457e-36
Identity = 73/140 (52.14%), Postives = 101/140 (72.14%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            C I  +EIDA+G +R+   +  +REIQRT++ELLNQLDGFD+ G VK+I+ATNR + LDPALLRPGR+DRKIE PLP+ ++R  I +IH + +    +++ E  V   + F+GAD++ ICTEAG+ A+R  R  V H DF
Sbjct:  234 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDF 373          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.105e-35
Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EIDA+G  R D+ + G+RE+QRT+++LL ++DGFD+RGDVK++ ATNRI+ LD ALLRPGR DR IE PLPD + R  I +IHT  M + +DVNL E     +  +GAD++AIC EAG+ A+R  R  V   DF
Sbjct:  253 DEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSRLTEGKNGADLRAICMEAGMFAIRMERDAVNSEDF 387          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.443e-35
Identity = 76/135 (56.30%), Postives = 97/135 (71.85%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EIDA+G KR D  +GGERE+ RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I ++HT +M L   V+L       +  SGAD+KAI TEAG+ A+R+RR  VT  DF
Sbjct:  238 DEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDF 371          
The following BLAST results are available for this feature:
BLAST of CX295421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
PSMR_THEGJ8.457e-3656.30Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_SULIY8.457e-3655.22Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN8.457e-3655.22Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM8.457e-3655.22Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL8.457e-3655.22Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK8.457e-3655.22Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA8.457e-3655.22Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PS10A_ARATH8.457e-3652.1426S protease regulatory subunit 10B homolog A OS=A... [more]
PSMR_METMJ1.105e-3553.33Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_PYRKO1.443e-3556.30Proteasome-activating nucleotidase OS=Pyrococcus k... [more]

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Properties
Property NameValue
Genbank descriptionC05072A08SK PhIFruit1 Citrus clementina cDNA clone C05072A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295421 ID=CX295421; Name=CX295421; organism=Citrus clementina; type=EST; length=645bp
GCTCGTGCCGAATTCGGCACGAGGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GTTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCCGATATCAAGACTAG
GAGACGTATTTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTTA
CTGTTCTGCATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCTTCTTTTGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAGCCGCTTTGG
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