CX295424

Overview
NameCX295424
Unique NameCX295424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_PYUSP (Calmodulin OS=Pyuridae sp. PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 46/136 (33.82%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  298 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + DA+ DG +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_DICDI (Calmodulin OS=Dictyostelium discoideum GN=calA PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 46/141 (32.62%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  283 SEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            S+E+ T   +    E F  FD D DGSIT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL M  + M+       ++ AF+  + DG+  ++ AEL  V+ +LG  L+  +  E+I   D DGDG V++++
Sbjct:    3 SQESLTEEQIAEFKEAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGNIDFPEFLTMMARKMQDTDTEEEIREAFKVFDKDGNGYISAAELRHVMTSLGEKLTNEEVDEMIREADLDGDGQVNYDE 143          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_CHLRE (Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 47/139 (33.81%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  289 ETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            E  T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL +  + M+     + L+ AF+  + DG+  ++ AEL  V+ NLG  LS  +  E+I   D DGDG V++E+
Sbjct:    6 EQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKLSEEEVDEMIREADVDGDGQVNYEE 144          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_PNECA (Calmodulin OS=Pneumocystis carinii PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 46/141 (32.62%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  283 SEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            +E+  T   +    E F  FD D DGSIT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL M  + M+       ++ AF+  + DG+ I++ AEL  V+ NLG  L+  +  E+I   D DGDG + + +
Sbjct:    3 NEQNLTEEQISEFKEAFSLFDKDGDGSITTKELGIVMRSLGQNPTEAELQDMVNEVDADGNGTIDFPEFLAMMARKMKDVDSEEEIREAFKVFDKDGNGIISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGVIDYSE 143          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_BLAEM (Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 46/136 (33.82%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  298 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++  M+ + DA+ +G +   EFL M  + M+       +K AF+  + DG+  ++ AEL  V+ NLG  LS  + +E+I   D DGDG +++E+
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELLVMINEVDADGNGTIDFPEFLTMMARKMKDSDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLSEDEVEEMIREADVDGDGQINYEE 141          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CML4_ORYSJ (Calmodulin-like protein 4 OS=Oryza sativa subsp. japonica GN=CML4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 43/136 (31.62%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  298 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            T   +++  E F  FD + DG IT  EL+ +  S+G   +++++ +MMR+ D + +G++  +EFL +  + M+ G     LK AFE L+ D +  ++  EL  V+ NLG  ++  + +++I   D DGDG V++++
Sbjct:    5 TSEQMVAFQEAFLLFDKNGDGCITLEELAAVTRSLGLEPTDQELNDMMREVDTDGNGIIDFQEFLSLIARKMKDGDGDEELKEAFEVLDKDQNGFISPTELRTVMTNLGEKMTDEEVEQMIREADTDGDGQVNYDE 140          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 46/136 (33.82%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  298 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL M  K M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAKKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_AGABI (Calmodulin OS=Agaricus bisporus PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 48/142 (33.80%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  280 LSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            LSEE      +    E F  FD D DG+IT  EL  +  S+G   S+ ++ +M+ + DA+ +G +   EFL M  + M        +K AF+  + DG+  ++ AEL  V+ NLG  L+ ++  E+I   D DGDG +++E+
Sbjct:    5 LSEE-----QISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPSQAELEDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDSEVDEMIREADVDGDGQINYEE 141          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CML24_ARATH (Calcium-binding protein CML24 OS=Arabidopsis thaliana GN=CML24 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 48/133 (36.09%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  325 ETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNL------LKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            + F+ FD + DG I+  EL  +  ++   AS E+   MM+Q D + +G + L+EF+ +    + +G  GN       LK AFE  +LDG+  ++  ELH V++NLG   S+ DC+++I+ +D DGDG V+F++
Sbjct:   20 KVFQRFDKNGDGKISVDELKEVIRALSPTASPEETVTMMKQFDLDGNGFIDLDEFVALF--QIGIGGGGNNRNDVSDLKEAFELYDLDGNGRISAKELHSVMKNLGEKCSVQDCKKMISKVDIDGDGCVNFDE 150          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_PHYPO (Calmodulin OS=Physarum polycephalum PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  298 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL M  + M        ++ AF+  + DG+  ++ AEL  V+ NLG  LS  +  E+I   D DGDG V++++
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGNITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMADTDTEEEIREAFKVFDKDGNGFISAAELRHVMTNLGEKLSDEEVDEMIREADVDGDGQVNYDE 141          
The following BLAST results are available for this feature:
BLAST of CX295424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CALM_PYUSP2.110e-1733.82Calmodulin OS=Pyuridae sp. PE=1 SV=2[more]
CALM_DICDI2.110e-1732.62Calmodulin OS=Dictyostelium discoideum GN=calA PE=... [more]
CALM_CHLRE2.110e-1733.81Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2[more]
CALM_PNECA2.756e-1732.62Calmodulin OS=Pneumocystis carinii PE=3 SV=1[more]
CALM_BLAEM3.599e-1733.82Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE... [more]
CML4_ORYSJ4.701e-1731.62Calmodulin-like protein 4 OS=Oryza sativa subsp. j... [more]
CALM_ELEEL4.701e-1733.82Calmodulin OS=Electrophorus electricus GN=calm PE=... [more]
CALM_AGABI4.701e-1733.80Calmodulin OS=Agaricus bisporus PE=1 SV=2[more]
CML24_ARATH6.140e-1736.09Calcium-binding protein CML24 OS=Arabidopsis thali... [more]
CALM_PHYPO6.140e-1733.09Calmodulin OS=Physarum polycephalum PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC05072A11SK PhIFruit1 Citrus clementina cDNA clone C05072A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295424 ID=CX295424; Name=CX295424; organism=Citrus clementina; type=EST; length=706bp
GAGGAAAGGGCCGGGTAGTGTGATAGAGTCGCGATCGGGATAATCTTTTG
GGTGCAACTTTGAGGATAAGGATAATAATTGCAAGCATAAGAATCGACGT
CTACTTTAATTATTCTACTTTAATTTTTGTCGACTCAAAGGAACAACAAA
AGAATAATGGCCGCCCCCTCATCTCCACTATTTATACATAGAATGAACCA
AATCCTAACAAAAGTGACGTTGTGCATTAATATTAGTTGTTGTGATTGCA
GAAGTTGATCCATGGCTCAATCCAGGCCTCTCTCCGAGGAAACCGAGACA
TTGAACCATGTCTTAAGTCTAGTGGAGACTTTCAGAGCCTTTGATTCGGA
CAACGATGGGTCGATCACTGGTGCTGAGCTCTCTGGAATATTCAATTCAG
TTGGTTACAGGGCTAGCGAGGAAGATGTCAGGGAAATGATGCGGCAAGGT
GACGCGAACAACGACGGATTGCTGAGCTTGGAGGAGTTCTTGGAGATGAA
CACCAAAGACATGGAGCTTGGAAGCCTTGGGAATTTGCTCAAGGCAGCTT
TTGAATCTCTGAATCTTGATGGTGATGATATCTTAACTGGAGCAGAGCTG
CATGAAGTTATTGAAAATTTAGGAGTTGGGTTGTCATTAGCTGATTGCCA
GGAGATTATTGCTTCCATGGATGGAGACGGTGATGGTGCTGTTAGCTTTG
AGGACC
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