CX295424

Overview
NameCX295424
Unique NameCX295424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_WHEAT (Calmodulin OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 45/136 (33.09%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  298 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            T   +    E F  FD D DG IT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL +  + M+       LK AF   + D D  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+
Sbjct:    6 TDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQDGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_TETPY (Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 44/136 (32.35%), Postives = 75/136 (55.15%), Query Frame = 1
Query:  298 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL +  + M+       L  AF+  + DG+ +++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEE 141          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_PROMN (Calmodulin OS=Prorocentrum minimum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 44/136 (32.35%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  298 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL +  + M+       L  AF+  + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_PFIPI (Calmodulin OS=Pfiesteria piscicida PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 44/136 (32.35%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  298 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL +  + M+       L  AF+  + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_PARTE (Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 45/139 (32.37%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  289 ETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            E  T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL +  + M+       L  AF+  + DG+ +++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+
Sbjct:    3 EQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEE 141          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_ORYLA (Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 44/127 (34.65%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  325 ETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL M  + M+       ++ AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+
Sbjct:    8 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 134          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_KARMI (Calmodulin OS=Karlodinium micrum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 44/136 (32.35%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  298 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL +  + M+       L  AF+  + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_EUGGR (Calmodulin OS=Euglena gracilis PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 45/139 (32.37%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  295 ETLNH--VLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            E L H  +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D +  G +   EFL + ++ M        +K AF   + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+
Sbjct:    3 EALTHEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMSRKMHDTDTEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM_ALEFU (Calmodulin OS=Alexandrium fundyense PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 44/136 (32.35%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  298 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL +  + M+       L  AF+  + DG+  ++ AEL  V+ NLG  L+  +  E+I   D DGDG +++E+
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX295424 vs. ExPASy Swiss-Prot
Match: CALM1_SOLTU (Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 46/139 (33.09%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  289 ETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDANNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFED 705
            E  T   +    E F  FD D DG IT  EL  +  S+G   +E ++++M+ + DA+ +G +   EFL +  + M+       LK AF+  + D +  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+
Sbjct:    3 EQLTEEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEADADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141          
The following BLAST results are available for this feature:
BLAST of CX295424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CALM_WHEAT1.786e-1633.09Calmodulin OS=Triticum aestivum PE=1 SV=3[more]
CALM_TETPY1.786e-1632.35Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4[more]
CALM_PROMN1.786e-1632.35Calmodulin OS=Prorocentrum minimum PE=2 SV=1[more]
CALM_PFIPI1.786e-1632.35Calmodulin OS=Pfiesteria piscicida PE=2 SV=1[more]
CALM_PARTE1.786e-1632.37Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 S... [more]
CALM_ORYLA1.786e-1634.65Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm... [more]
CALM_KARMI1.786e-1632.35Calmodulin OS=Karlodinium micrum PE=2 SV=1[more]
CALM_EUGGR1.786e-1632.37Calmodulin OS=Euglena gracilis PE=1 SV=2[more]
CALM_ALEFU1.786e-1632.35Calmodulin OS=Alexandrium fundyense PE=2 SV=1[more]
CALM1_SOLTU1.786e-1633.09Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC05072A11SK PhIFruit1 Citrus clementina cDNA clone C05072A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295424 ID=CX295424; Name=CX295424; organism=Citrus clementina; type=EST; length=706bp
GAGGAAAGGGCCGGGTAGTGTGATAGAGTCGCGATCGGGATAATCTTTTG
GGTGCAACTTTGAGGATAAGGATAATAATTGCAAGCATAAGAATCGACGT
CTACTTTAATTATTCTACTTTAATTTTTGTCGACTCAAAGGAACAACAAA
AGAATAATGGCCGCCCCCTCATCTCCACTATTTATACATAGAATGAACCA
AATCCTAACAAAAGTGACGTTGTGCATTAATATTAGTTGTTGTGATTGCA
GAAGTTGATCCATGGCTCAATCCAGGCCTCTCTCCGAGGAAACCGAGACA
TTGAACCATGTCTTAAGTCTAGTGGAGACTTTCAGAGCCTTTGATTCGGA
CAACGATGGGTCGATCACTGGTGCTGAGCTCTCTGGAATATTCAATTCAG
TTGGTTACAGGGCTAGCGAGGAAGATGTCAGGGAAATGATGCGGCAAGGT
GACGCGAACAACGACGGATTGCTGAGCTTGGAGGAGTTCTTGGAGATGAA
CACCAAAGACATGGAGCTTGGAAGCCTTGGGAATTTGCTCAAGGCAGCTT
TTGAATCTCTGAATCTTGATGGTGATGATATCTTAACTGGAGCAGAGCTG
CATGAAGTTATTGAAAATTTAGGAGTTGGGTTGTCATTAGCTGATTGCCA
GGAGATTATTGCTTCCATGGATGGAGACGGTGATGGTGCTGTTAGCTTTG
AGGACC
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