CX295428

Overview
NameCX295428
Unique NameCX295428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_HUMAN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720
            +++  +  V    F   GKLLAS   D  + +W+ + F+   T   H+H ++ V   PN   + ++S DKT+++W+  +  +C++T+TGH   V  +   P ++  L  SC  +  +R W ++   C
Sbjct:  145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_BOVIN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720
            +++  +  V    F   GKLLAS   D  + +W+ + F+   T   H+H ++ V   PN   + ++S DKT+++W+  +  +C++T+TGH   V  +   P ++  L  SC  +  +R W ++   C
Sbjct:  145 TLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1B_XENLA (Lissencephaly-1 homolog B OS=Xenopus laevis GN=pafah1b1-B PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720
            +++  +  V    F   GKLLAS   D  + +W+ + F+   T   H+H ++ V   PN   + ++S DKT+++W+  +  +C++T+TGH   V  +   P ++  L  SC  +  +R W ++   C
Sbjct:  145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECLRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720
            +++  +  V    F   GKLLAS   D  + +W+ + F+   T   H+H ++ V   PN   + ++S DKT+++W+  +  +C++T+TGH   V  +   P ++  L  SC  +  +R W ++   C
Sbjct:  145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_PONAB (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 34/114 (29.82%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  382 FSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720
            F   GKLLAS   D  + +W+ + F+   T   H+H ++ V   PN   + ++S DKT+++W+  +  +C++T+TGH   V  +   P ++  L  SC  +  +R W ++   C
Sbjct:  158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 44/146 (30.14%), Postives = 72/146 (49.32%), Query Frame = 1
Query:  292 SEQATETSKAFSFNEVS-SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTEC--TPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSC 720
            SE AT     F   E   S++  +  V    F + GKLLAS   D  + +W+ +    EC  T   H+H ++ V F P    + ++S D+T+++W+ A   +C++TYTGH   V  +  H  +  +F +C  +  IR W  +   C
Sbjct:  127 SEDATIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQ-SYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVAT-GYCVKTYTGHREWVRMVRVH-IEGSIFATCSNDQTIRVWLTNSKDC 269          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720
            +++  +  V    F   GKLLAS   D  + +W+ + F+   T   H+H ++ V   PN   + ++S DKT+++W+  +  +C++T+TGH   V  +   P ++  L  SC  +  +R W ++   C
Sbjct:  145 TLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_MACFA (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 35/127 (27.56%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720
            +++  +  V    F   GKLL S   D  + +W+ + F+   T   H+H ++ V   PN   L ++S DKT+++W+  +  +C++T+TGH   V  +   P ++  L  SC  +  +R W ++   C
Sbjct:  145 TLKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: HETE1_PODAN (Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  361 SKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 726
            S V    FS+DG+ +AS   DK + +W+  +     T + H   +  V F P+  ++A+ S DKT++IWDAA    C QT  GH   V S+ F P    +    D ++ I+ W+ +  +C +
Sbjct:  842 SSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAAS-GTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHT-IKIWDAASGTCTQ 961          

HSP 2 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 38/122 (31.15%), Postives = 60/122 (49.18%), Query Frame = 1
Query:  361 SKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 726
            S V    FS DG+ +AS   DK + +W+  +     T + H   +  V F P+  ++A+ S DKT++IWD A    C QT  GH   V S+ F P    +    D ++ I+ W+    +C +
Sbjct:  968 SSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTAS-GTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHT-IKIWDAVSGTCTQ 1087          

HSP 3 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 36/121 (29.75%), Postives = 59/121 (48.76%), Query Frame = 1
Query:  364 KVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 726
            +V    FS DG+ +AS   D  + +W+  +     T + H   +  V F P+  ++A+ S DKT++IWD A    C QT  GH   V S+ F P    +    D +  I+ W+ +  +C +
Sbjct:  927 RVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTAS-GTCTQTLEGHGGSVWSVAFSPDGQRVASGSD-DKTIKIWDTASGTCTQ 1045          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_PIG (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus scrofa GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 34/127 (26.77%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720
            +++  +  V    F   GKLLAS   D  + +W+ + F+   T   H+H ++ V   PN   + +++ DKT+++W+  +  +C++T+TGH   V  +   P ++  L  SC  +  +R W ++   C
Sbjct:  145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268          
The following BLAST results are available for this feature:
BLAST of CX295428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
LIS1_HUMAN1.648e-1227.56Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_BOVIN1.648e-1227.56Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1B_XENLA1.648e-1227.56Lissencephaly-1 homolog B OS=Xenopus laevis GN=paf... [more]
LIS1A_XENLA1.648e-1227.56Lissencephaly-1 homolog A OS=Xenopus laevis GN=paf... [more]
LIS1_PONAB2.152e-1229.82Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_DROME2.152e-1230.14Lissencephaly-1 homolog OS=Drosophila melanogaster... [more]
LIS1_CHICK2.152e-1227.56Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_MACFA2.811e-1227.56Platelet-activating factor acetylhydrolase IB subu... [more]
HETE1_PODAN2.811e-1231.97Vegetative incompatibility protein HET-E-1 OS=Podo... [more]
LIS1_PIG3.671e-1226.77Platelet-activating factor acetylhydrolase IB subu... [more]

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Properties
Property NameValue
Genbank descriptionC05072B03SK PhIFruit1 Citrus clementina cDNA clone C05072B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295428 ID=CX295428; Name=CX295428; organism=Citrus clementina; type=EST; length=729bp
GGGTGGAAACCCGTTGGCCCTTCTCCAAATTCCCAACCATCTACCCCATC
AACTCATACACCTGGTGATGCCGTAGCCATGTCAGGCAGTATGCAGCATG
TTAGTAACGTGCCTAAAGGTTTGATGATGTATGGTTCTGATGGAACAGGT
GGTCATGCATCATCGACAAACCAGCTGGATGACATGGAACATTTTGGAGA
TATTGGCTCCTTAGATGATAATGTGGAATCTTTTCTCTCTCAAGATGATG
GAGATGGAAGGGATCTGTTTGGCACATTGAAACGGAACCCTTCCGAACAA
GCTACTGAAACTTCCAAAGCTTTCTCATTCAACGAAGTTAGTTCAATACG
TAAAAGTAGTAGCAAAGTTACCTGTTGTCATTTCTCTTCAGATGGAAAGT
TATTGGCCAGTGCTGGGCATGACAAGAAGGTTGTTGTTTGGAACATGGAA
AATTTTCAAACTGAATGCACTCCAGATGATCACAATCATATAATTACTGA
TGTTCGCTTCAGACCAAATTCAACTCAGCTAGCAACATCTTCATTTGATA
AGACAGTGCGAATTTGGGATGCTGCTAAACCAAACTTTTGCTTGCAGACT
TATACAGGGCATAACAATCACGTGATGTCCCTTGACTTCCACCCTAAGAA
GAATGACCTTTTCTGCTCATGTGATGGAAACAGTGAGATTCGCTTCTGGA
ATCTAAGTCAGTACTCCTGCGCTCGTATT
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