CX295428
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_HUMAN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12 Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 1 Query: 343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720 +++ + V F GKLLAS D + +W+ + F+ T H+H ++ V PN + ++S DKT+++W+ + +C++T+TGH V + P ++ L SC + +R W ++ C Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_BOVIN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12 Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 1 Query: 343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720 +++ + V F GKLLAS D + +W+ + F+ T H+H ++ V PN + ++S DKT+++W+ + +C++T+TGH V + P ++ L SC + +R W ++ C Sbjct: 145 TLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1B_XENLA (Lissencephaly-1 homolog B OS=Xenopus laevis GN=pafah1b1-B PE=2 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12 Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 1 Query: 343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720 +++ + V F GKLLAS D + +W+ + F+ T H+H ++ V PN + ++S DKT+++W+ + +C++T+TGH V + P ++ L SC + +R W ++ C Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECLRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12 Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 1 Query: 343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720 +++ + V F GKLLAS D + +W+ + F+ T H+H ++ V PN + ++S DKT+++W+ + +C++T+TGH V + P ++ L SC + +R W ++ C Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_PONAB (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12 Identity = 34/114 (29.82%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 382 FSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720 F GKLLAS D + +W+ + F+ T H+H ++ V PN + ++S DKT+++W+ + +C++T+TGH V + P ++ L SC + +R W ++ C Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12 Identity = 44/146 (30.14%), Postives = 72/146 (49.32%), Query Frame = 1 Query: 292 SEQATETSKAFSFNEVS-SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTEC--TPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSC 720 SE AT F E S++ + V F + GKLLAS D + +W+ + EC T H+H ++ V F P + ++S D+T+++W+ A +C++TYTGH V + H + +F +C + IR W + C Sbjct: 127 SEDATIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQ-SYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVAT-GYCVKTYTGHREWVRMVRVH-IEGSIFATCSNDQTIRVWLTNSKDC 269
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12 Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 1 Query: 343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720 +++ + V F GKLLAS D + +W+ + F+ T H+H ++ V PN + ++S DKT+++W+ + +C++T+TGH V + P ++ L SC + +R W ++ C Sbjct: 145 TLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_MACFA (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12 Identity = 35/127 (27.56%), Postives = 65/127 (51.18%), Query Frame = 1 Query: 343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720 +++ + V F GKLL S D + +W+ + F+ T H+H ++ V PN L ++S DKT+++W+ + +C++T+TGH V + P ++ L SC + +R W ++ C Sbjct: 145 TLKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: HETE1_PODAN (Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12 Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 1 Query: 361 SKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 726 S V FS+DG+ +AS DK + +W+ + T + H + V F P+ ++A+ S DKT++IWDAA C QT GH V S+ F P + D ++ I+ W+ + +C + Sbjct: 842 SSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAAS-GTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHT-IKIWDAASGTCTQ 961 HSP 2 Score: 68.1662 bits (165), Expect = 5.301e-11 Identity = 38/122 (31.15%), Postives = 60/122 (49.18%), Query Frame = 1 Query: 361 SKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 726 S V FS DG+ +AS DK + +W+ + T + H + V F P+ ++A+ S DKT++IWD A C QT GH V S+ F P + D ++ I+ W+ +C + Sbjct: 968 SSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTAS-GTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHT-IKIWDAVSGTCTQ 1087 HSP 3 Score: 67.3958 bits (163), Expect = 9.042e-11 Identity = 36/121 (29.75%), Postives = 59/121 (48.76%), Query Frame = 1 Query: 364 KVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 726 +V FS DG+ +AS D + +W+ + T + H + V F P+ ++A+ S DKT++IWD A C QT GH V S+ F P + D + I+ W+ + +C + Sbjct: 927 RVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTAS-GTCTQTLEGHGGSVWSVAFSPDGQRVASGSD-DKTIKIWDTASGTCTQ 1045
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1_PIG (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus scrofa GN=PAFAH1B1 PE=2 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12 Identity = 34/127 (26.77%), Postives = 66/127 (51.97%), Query Frame = 1 Query: 343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720 +++ + V F GKLLAS D + +W+ + F+ T H+H ++ V PN + +++ DKT+++W+ + +C++T+TGH V + P ++ L SC + +R W ++ C Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWE-VQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKEC 268 The following BLAST results are available for this feature:
BLAST of CX295428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295428 ID=CX295428; Name=CX295428; organism=Citrus clementina; type=EST; length=729bpback to top |