CX295435

Overview
NameCX295435
Unique NameCX295435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig369 contig Ccv1_Contig369:1..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.218e-28
Identity = 69/143 (48.25%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  193 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 621
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG  VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTMMRKAIRGHLE--NNPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGI 143          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 64/145 (44.14%), Postives = 89/145 (61.38%), Query Frame = 1
Query:  187 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 621
            +V+  ++  K  Y  KL +L EEY + L+   DNVGS Q+Q IR+ +RG + +LMGKNTM+++ +R H  K  N +   L+P +  NVG +FTK DL            GAPA+ G +AP DV +PP NTG+ P +TSFFQ L I
Sbjct:    1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGK--NPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQI 143          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.544e-28
Identity = 63/140 (45.00%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  202 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 621
            K+  K  Y  KL  LLEEY  I + + DNV S Q+  IR+ LR   VVLMGKNTM++R ++       +  +  L+P ++GNVG +FT GDL             APAR G VAP+DV +P GNTG++P +TSFFQ L +
Sbjct:    4 KSANKAGYFDKLKGLLEEYKSIFIVSVDNVSSQQMHEIRQALRDQGVVLMGKNTMVRRALKTFL--VDSPEYERLLPFVKGNVGFVFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIPAGNTGMEPGKTSFFQALGV 141          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.489e-26
Identity = 60/146 (41.10%), Postives = 92/146 (63.01%), Query Frame = 1
Query:  187 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGA-PARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 621
            + K SK +KK  Y  KL  L+++Y++IL+   DNVGSNQ+ ++R+ LRG + +LMGKNT ++  ++ + +         L+PL++ N+G +F K DL             + PAR+G++APIDV +PPG TG+DPS TSF + L I
Sbjct:    1 MAKLSKQQKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIRTALKKNLQAVPQIE--KLLPLVKLNMGFVFCKDDLSEIRNIILDNKSSSHPARLGVIAPIDVFIPPGPTGMDPSHTSFLESLGI 144          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.394e-24
Identity = 62/138 (44.93%), Postives = 80/138 (57.97%), Query Frame = 1
Query:  208 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 621
            EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR       +  F  L+P ++G VG +FT   L             APAR G VAP D+ V   NTG++P +TSFFQ L +
Sbjct:    6 EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPD--FEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGV 141          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.820e-24
Identity = 59/142 (41.55%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  196 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 621
            A   E K  Y  KL  L E+Y  + V   DNV S Q+  +R+ LRG + ++MGKNTM++R +R             L+P+++GNVG +FT  DL             APAR   +AP+DV VP GNTG++P +TSFFQ L I
Sbjct:    2 AISKESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELE--RLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGI 141          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.225e-22
Identity = 58/139 (41.73%), Postives = 80/139 (57.55%), Query Frame = 1
Query:  205 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 621
            A K+  Y  +L QL+ E+ ++LV +AD+VGS QL  IR  LRG + VLMGKNT ++  +R   ++        L+PL++ NVG IF + D              APA+ G+ AP DV +P G TG+DP  T FFQ L I
Sbjct:    6 AAKRREYFPRLLQLVLEHPRVLVVSADHVGSKQLAGIRVALRGQATVLMGKNTKIRTALRQQLQQ--QPQLQALLPLVRLNVGFIFCRADPAAVRAVVQQHKVPAPAKQGVTAPTDVFIPAGPTGMDPGSTGFFQALGI 142          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.906e-22
Identity = 59/148 (39.86%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  199 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI-------PLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 621
            S +E K  Y+ +    L +Y ++L    DNV S Q+ ++RR LRG   ++MGK T+ K+ +   AE    +A+  L+        LL GN  LIFT  ++             APARVG +AP DV+VP GNTG++P  TSFFQ LNI
Sbjct:    3 SVSEAKREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVERRAEDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVGAIAPCDVIVPAGNTGMEPKATSFFQALNI 150          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 56/139 (40.29%), Postives = 82/139 (58.99%), Query Frame = 1
Query:  205 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 621
            +++K  +  K  +L   Y +++VA AD VGS+QLQ IR+ +RG   VLMGK TM+++ IR  A+       LN    L+ N  +IF K ++            GAPA+ G+ AP DV++P G TG++P+QTSF Q L I
Sbjct:    6 SKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALN--TYLKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKI 142          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.927e-19
Identity = 55/143 (38.46%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  214 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI-------PLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 621
            K  Y+ +L   L +Y+ +L    DNV S Q+ ++RRG RG +  +MGK T+  + +   A+    +              LL GN GLIFT   +             APARVG + P DVVVP G+TG++P+QTSFFQ LNI
Sbjct:    8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRGCRGKAEFIMGKKTLQAKIVEKRAQAKDASPEAKPFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDGHRVKAPARVGAI-PCDVVVPAGSTGMEPTQTSFFQALNI 149          
The following BLAST results are available for this feature:
BLAST of CX295435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RLA0L_HUMAN1.218e-2848.2560S acidic ribosomal protein P0-like OS=Homo sapie... [more]
RLA0_CAEEL2.078e-2844.1460S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0_PODAN3.544e-2845.0060S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_PLAF81.489e-2641.1060S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_YEAST1.394e-2444.9360S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_SCHPO1.820e-2441.5560S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_EIMTE2.225e-2241.7360S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_TRYCR2.906e-2239.8660S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_DICDI9.348e-2140.2960S acidic ribosomal protein P0 OS=Dictyostelium d... [more]
RLA0_LEICH3.927e-1938.4660S acidic ribosomal protein P0 OS=Leishmania chag... [more]

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Properties
Property NameValue
Genbank descriptionC05072B10SK PhIFruit1 Citrus clementina cDNA clone C05072B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295435 ID=CX295435; Name=CX295435; organism=Citrus clementina; type=EST; length=622bp
GAGGCCAGATCATCTAGGGTTTTTCTTGTACACTTCTTTCACTCTCTTTG
TATCTCGTTGAGGTTAAAGAGACGGCAACTCCGCTGCTGTCCGCCTTGGC
AAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGTATAAATTTACAACTTTT
TACCACCAACAAAAGTAGAACCAAATCCACGAAATGGTAGTGAAAGCATC
GAAGGCCGAGAAGAAGATCGCGTACGACGCGAAGCTATGCCAGTTGCTGG
AAGAGTACACCCAAATCTTGGTGGCGGCCGCCGACAACGTGGGGTCCAAT
CAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTAAT
GGGAAAGAACACTATGATGAAGAGGACTATCAGAATGCACGCTGAGAAGA
CCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTT
GGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGC
TAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTG
ATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCC
TTCTTCCAGGTGCTTAACATTC
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