CX295435

Overview
NameCX295435
Unique NameCX295435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.383e-16
Identity = 49/143 (34.27%), Postives = 72/143 (50.35%), Query Frame = 1
Query:  214 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 621
            K  Y+ +L   L +Y+ +L    DNV S Q+ ++ R LR  +  +MGK T+  + +   A+    +              LL GN GLIFT   +               ARVG ++P DV+V  G+TG++P+QTSFFQ LNI
Sbjct:    8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVGRALRAKAEFMMGKKTLQGKIVEKRAQAKDASPEAKHFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDAHRVKRAARVGAISPCDVIVAAGSTGMEPTQTSFFQALNI 150          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_HALSA (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  229 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDP 588
            A+L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP
Sbjct:   21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDP 135          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_HALS3 (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  229 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDP 588
            A+L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP
Sbjct:   21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDP 135          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 48/146 (32.88%), Postives = 77/146 (52.74%), Query Frame = 1
Query:  184 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 621
            M  K +K  K++ Y+ +  +L E Y++  +   +NV S QL++I+R   G++ +LMGKN+ ++R I       G      +  L++G+V  +F KG+              A A+VG VA  DV V    TG+ P +TS+FQ L I
Sbjct:   25 MTRKDAKERKELTYE-RARKLFETYSRFALVKIENVVSTQLKDIKRQWGGNAELLMGKNSAIRRAI----ADLGKPELSGVYDLVKGDVCFVFFKGNARDIKKAIDENVREACAKVGNVAQRDVWVESCITGMTPDKTSYFQALGI 165          
BLAST of CX295435 vs. ExPASy Swiss-Prot
Match: RLA0_NATPD (Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = 1
Query:  232 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDP 588
            +L   LE Y  + V     + S QLQ++RR L G + + + +NT+M+R +    +  G      L+  ++G VGLI T  +              AP   G VAP D+V+P G+TG+DP
Sbjct:   21 ELVAFLERYESVGVVDITGIPSRQLQDMRRDLHGTAALRVSRNTLMERALNEGGDGLG-----ELVEHVEGQVGLIGTNDNPFGLYQQLEESKTPAPINAGEVAPNDIVIPEGDTGVDP 134          
The following BLAST results are available for this feature:
BLAST of CX295435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RLA0_LEIIN2.383e-1634.2760S acidic ribosomal protein P0 OS=Leishmania infa... [more]
RLA0_HALSA2.087e-1235.83Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_HALS32.087e-1235.83Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_ENCCU2.087e-1232.8860S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_NATPD5.141e-1132.77Acidic ribosomal protein P0 homolog OS=Natronomona... [more]

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Properties
Property NameValue
Genbank descriptionC05072B10SK PhIFruit1 Citrus clementina cDNA clone C05072B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295435 ID=CX295435; Name=CX295435; organism=Citrus clementina; type=EST; length=622bp
GAGGCCAGATCATCTAGGGTTTTTCTTGTACACTTCTTTCACTCTCTTTG
TATCTCGTTGAGGTTAAAGAGACGGCAACTCCGCTGCTGTCCGCCTTGGC
AAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGTATAAATTTACAACTTTT
TACCACCAACAAAAGTAGAACCAAATCCACGAAATGGTAGTGAAAGCATC
GAAGGCCGAGAAGAAGATCGCGTACGACGCGAAGCTATGCCAGTTGCTGG
AAGAGTACACCCAAATCTTGGTGGCGGCCGCCGACAACGTGGGGTCCAAT
CAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTAAT
GGGAAAGAACACTATGATGAAGAGGACTATCAGAATGCACGCTGAGAAGA
CCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTT
GGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGC
TAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTG
ATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCC
TTCTTCCAGGTGCTTAACATTC
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