CX295440

Overview
NameCX295440
Unique NameCX295440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig582 contig Ccv1_Contig582:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR2_YEAST (Methylenetetrahydrofolate reductase 2 OS=Saccharomyces cerevisiae GN=MET13 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.197e-38
Identity = 92/222 (41.44%), Postives = 124/222 (55.86%), Query Frame = 2
Query:   14 VHLYTLNMEKSALAILLNLGLIE-ESKISRS----LPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGW--DQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMA 658
            +H+YT+N+EK+ L IL  L ++  ES+ +      LPWR   N  R  E+VRPIFW  RP SY++RT  W  D++P GR+GDS +P++G L        R    K  E W+ P  S+ D+     NY  G L+  PWS++  +  E   I   L ++N    +TINSQP VNG RS+    GWG   GYVYQK YLEF     KL  L+D  K   F+T+ A
Sbjct:  279 LHIYTMNLEKAPLMILERLNILPTESEFNAHPLAVLPWRKSLNPKRKNEEVRPIFWKRRPYSYVARTSQWAVDEFPNGRFGDSSSPAFGDLDLCGSDLIRQSANKCLELWSTPT-SINDVAFLVINYLNGNLKCLPWSDIP-INDEINPIKAHLIELNQHSIITINSQPQVNGIRSNDKIHGWGPKDGYVYQKQYLEFMLPKTKLPKLIDTLKNNEFLTYFA 498          
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR1_YEAST (Methylenetetrahydrofolate reductase 1 OS=Saccharomyces cerevisiae GN=MET12 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 2
Query:  188 LSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFF 589
            L R   WD++P GR+GDSR+P+YG +  +      S+ K L E W +P K++ D+ + F  Y  G   + PWS+L GL  ET +I E+L ++N +G+LT+ SQPA N   S     GWG   G +YQKA++E F
Sbjct:  402 LGRDATWDEFPNGRFGDSRSPAYGEIDGYGPSIKVSKSKAL-ELWGIP-KTIGDLKDIFIKYLEGSTDAIPWSDL-GLSAETALIQEELIQLNYRGYLTLASQPATNATLSSDKIFGWGPAKGRLYQKAFVEMF 532          
BLAST of CX295440 vs. ExPASy Swiss-Prot
Match: MTHR2_SCHPO (Methylenetetrahydrofolate reductase 2 OS=Schizosaccharomyces pombe GN=met11 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.444e-19
Identity = 74/261 (28.35%), Postives = 114/261 (43.68%), Query Frame = 2
Query:   17 HLYTLNMEKSALAILLNLGLI-----------EESKISRS------------------LPWRPP-----TNVFRVKEDV-----------RPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDH--QFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMA 658
            H  TLN+E+S   IL N GL+           E+ K+ R+                  +P + P     +N+F   +                F  +     L R   WD +  GR+GD R+P+YG +  +      P S   KL   W  P+    DI   F+ + +  + + PW + + ++ ETK I + L K+N   + T+ SQPAVNG  S     GWG  GG V+QKA++E F + + L   + K    P +T+ A
Sbjct:  287 HFCTLNLERSVALILKNSGLLTKRWKQVESEMEDEKLLRTTRKRLSLDEPAELHNQVVVPSQQPVADKSSNLFVTSKQSSVSGHKDNLTEEAPFSVSEGSGVLGRQANWDDFTNGRFGDPRSPAYGEIDGYGPTLHFPPSEALKL---WGYPVDE-SDITSLFQKHIMSDISAIPWID-EPVEVETKTIAKYLLKLNGNSWWTVGSQPAVNGAPSADPVFGWGPKGGRVFQKAFVECFVNGKDLKDFITKWHDNPQVTYYA 542          
The following BLAST results are available for this feature:
BLAST of CX295440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MTHR2_YEAST4.197e-3841.44Methylenetetrahydrofolate reductase 2 OS=Saccharom... [more]
MTHR1_YEAST3.814e-2341.79Methylenetetrahydrofolate reductase 1 OS=Saccharom... [more]
MTHR2_SCHPO7.444e-1928.35Methylenetetrahydrofolate reductase 2 OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionC05072C03SK PhIFruit1 Citrus clementina cDNA clone C05072C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295440 ID=CX295440; Name=CX295440; organism=Citrus clementina; type=EST; length=658bp
GAGGGATTAGACTGTGCATCTTTATACTCTAAACATGGAGAAATCTGCAT
TAGCTATATTATTGAATCTTGGTTTGATTGAAGAGTCCAAAATTTCCAGA
TCCTTACCCTGGAGACCCCCTACTAATGTTTTCCGCGTTAAGGAAGATGT
TCGTCCAATATTTTGGGCTAATCGTCCAAAGAGCTACTTATCAAGGACAG
TTGGTTGGGACCAGTATCCACGTGGACGATGGGGTGATTCTCGTAACCCA
TCATATGGTGCTTTATCTGACCATCAGTTTATGCGGCCTCGTTCACGTGA
CAAGAAACTTCATGAAGAATGGGCTGTCCCCTTGAAAAGTGTTGAAGATA
TCTATGAAAAATTTAAGAATTACTGCCTTGGGAAATTGAGAAGCAGTCCT
TGGTCAGAGTTAGACGGGCTTCAGCCAGAGACCAAAATCATAAATGAACA
GCTTGGAAAGATCAATGTGAAAGGTTTCCTCACTATCAACAGCCAGCCGG
CAGTCAATGGTGAAAGATCCGATTCATCTTCTGTTGGTTGGGGTGGGCCA
GGAGGATATGTTTATCAGAAAGCATATCTAGAGTTTTTCTGCTCACCAGA
GAAGTTGACTGCACTTGTTGACAAAAGCAAAGCTCTTCCATTCATAACCT
TCATGGCT
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