CX295448

Overview
NameCX295448
Unique NameCX295448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9858 contig Ccv1_Contig9858:45..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295448 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 7.722e-60
Identity = 112/219 (51.14%), Postives = 140/219 (63.93%), Query Frame = 2
Query:   65 SAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPAS-DYCYRYC--PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIESNAGRLPGYGL 709
            SA  CG G          G+ G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT  ETTGGW  AP G YAWGYC+  +    A  DYC +    PC    +YYGRGPIQL++N NY   G+A+G DLL +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA +  AGR+PGYG+
Sbjct:   61 SAAGCGGG----GPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGV 275          
BLAST of CX295448 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.934e-59
Identity = 105/191 (54.97%), Postives = 136/191 (71.20%), Query Frame = 2
Query:  137 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIESNAGRLPGYGL 709
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT  ETTGGW  AP G +AWGYC + +++             P    YYGRGPIQLT   NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS  + ++GRLPGYG+
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEIT-------------PSDPPYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGM 203          
BLAST of CX295448 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.610e-57
Identity = 108/199 (54.27%), Postives = 139/199 (69.85%), Query Frame = 2
Query:  119 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIESNAGRLPGYGL 709
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT  ET GG      G +  GYC++RQ+ +  SD            +YYGRGPIQLT   NY R G+ +GV  DL+NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  ++ A R+PGYG+
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQ--SD------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGV 201          
BLAST of CX295448 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.325e-56
Identity = 105/197 (53.30%), Postives = 139/197 (70.56%), Query Frame = 2
Query:  119 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIESNAGRLPGYGL 709
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT  ETTGG   A G  +A GYC++R+ ++  S +             YGRGPIQLT   NY   G+A+G DL+NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA +++A R PGYG+
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADG-PFAGGYCFVREGNQMGSGF-------------YGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGV 195          
BLAST of CX295448 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.325e-56
Identity = 106/199 (53.27%), Postives = 138/199 (69.35%), Query Frame = 2
Query:  119 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIESNAGRLPGYGL 709
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT  ET GG      G +  GYC+++Q+ +  SD            +YYGRGPIQLT   NY R G+ +GV  +L+NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS  ++ A R+PGYG+
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQ--SD------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGV 201          
BLAST of CX295448 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.666e-54
Identity = 104/212 (49.06%), Postives = 140/212 (66.04%), Query Frame = 2
Query:   77 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIESNAGRLPGYGL 709
            C +  +     +G    G  +G +I++ +F  +LP R++ +CPARGFYTYDAFI AA +FPAFG SG    + +RE+AAFF QT  ETTGG   +   ++ WGYC+  ++++  S              YYGRGPIQLT   NY   G ALG+DL+ NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA ++ AGR+PGYG+
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSP------------PYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGV 210          
BLAST of CX295448 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.080e-53
Identity = 103/197 (52.28%), Postives = 134/197 (68.02%), Query Frame = 2
Query:  119 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIESNAGRLPGYGL 709
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT  ETTGG   +P G YA GYC++R+ ++  + Y             YGRGPIQLT   NY   G+A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA +++A R+PGYG+
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLREGNQMGNGY-------------YGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGV 202          
BLAST of CX295448 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.143e-53
Identity = 102/191 (53.40%), Postives = 131/191 (68.59%), Query Frame = 2
Query:  137 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIESNAGRLPGYGL 709
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG +G++T R++EIAAFF QT  ETTGG   A    +  GYC++RQ  +  SD            +YYGRGPIQLT   NY + G A+G +L+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA +  A R+PGYG+
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQ--SD------------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGV 201          
BLAST of CX295448 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.037e-52
Identity = 102/210 (48.57%), Postives = 124/210 (59.05%), Query Frame = 2
Query:   80 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIESNAGRLPGYGL 709
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT  ET G WP A G +Y WGYC++                                 N NY  CG+ L + LL  P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA +S AGR+PGYG+
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM---------------------------------NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGV 242          
BLAST of CX295448 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.926e-52
Identity = 102/191 (53.40%), Postives = 129/191 (67.54%), Query Frame = 2
Query:  137 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIESNAGRLPGYGL 709
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG SG++T R++EIAAFF QT  ETTGG   A    +  GYC++RQ  +  SD            +YYGRGPIQLT   NY + G A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA + +A R PG G+
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQ--SD------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGV 201          
The following BLAST results are available for this feature:
BLAST of CX295448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI12_ORYSJ7.722e-6051.14Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI11_ORYSJ2.934e-5954.97Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI1.610e-5754.27Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIB_SOLLC2.325e-5653.30Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLLC2.325e-5653.27Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ1.666e-5449.06Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY1.080e-5352.28Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIQ_TOBAC9.143e-5353.40Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIB_POPTR2.037e-5248.57Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIP_TOBAC5.926e-5253.40Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC05072C11SK PhIFruit1 Citrus clementina cDNA clone C05072C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295448 ID=CX295448; Name=CX295448; organism=Citrus clementina; type=EST; length=709bp
GAGGATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTT
TTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGT
GAACGTGATACTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCAT
CTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGAT
GCCCTGCCAGAGGCTTCTACACTTACGATGCTTTTATAGAGGCAGCCAAA
GCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGA
AATTGCTGCCTTTTTTGCCCAAACTGGCGATGAAACTACTGGGGGATGGC
CCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAA
GTTAGCCGCCCTGCGTCCGACTACTGTTATCGTTACTGTCCATGTCCTTT
GCCAGGGCAATACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTGCA
ATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCA
GACCTTCTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTT
CTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCG
ACGAATGGAAACCATCAGCAATTGAAAGTAACGCCGGCCGGCTTCCGGGA
TACGGTCTA
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