CX295460

Overview
NameCX295460
Unique NameCX295460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295460_ssr104 microsatellite CX295460_ssr104:104..115. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295460_ssr638 microsatellite CX295460_ssr638:638..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y2558_ORYSJ (B3 domain-containing protein Os02g0455800 OS=Oryza sativa subsp. japonica GN=Os02g0455800 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  250 IIGEGEAEEDRVLISLEKEHMFDKVVTPSDV-GKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDR--NGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFI 612
            I+G  E+ +  VL   E E++F+K + PSD+      L IP++H  K F +     +   ++ F+D    GK W FRY  W S+  + +TKGW  FV++K L AGD +SF RG    A GRLFI
Sbjct:   11 IVGAEESVDKEVL---EMEYLFEKFLMPSDLCSNTEWLGIPEEHVRK-FGMMLEDRDGYSVIFFQDGVVPGKLWCFRY--WKSNGVHGLTKGWRCFVREKGLKAGDTISFFRG---SACGRLFI 125          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: ARFO_ORYSJ (Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 41/109 (37.61%), Postives = 54/109 (49.54%), Query Frame = 1
Query:  256 GEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFP-LDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRG 579
            GEGE  +          HMF K +T SD        +P++ AE  FP LD S       L  +D +   WRFR+ Y    + +++T GWS FV  KKL +GD V F RG
Sbjct:  123 GEGEDGDGMKQRFARMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHSTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRG 231          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: ARFB_ORYSJ (Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 46/117 (39.32%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  256 GEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFP-LDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGV-GDLAKG 600
            GEGE   D V       HMF K +T SD        +P++ AE  FP LD S       L  +D +G  WRFR+ Y    + +++T GWS F+  KKL +GD V F RG  G+L  G
Sbjct:  131 GEGE---DAVKRPARIPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFLRGEDGELRLG 244          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: ARFC_ORYSJ (Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  238 ETKDIIGEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFP-LDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRG 579
            E +D + +G+ E    ++     HMF K +T SD        +P++ AE  FP LD         L  +D +G  WRFR+ Y    + +++T GWS FV  KKL +GD V F RG
Sbjct:  171 EREDDMEDGDEERKSRML-----HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQLRPSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFLRG 280          
The following BLAST results are available for this feature:
BLAST of CX295460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
Y2558_ORYSJ1.018e-1139.52B3 domain-containing protein Os02g0455800 OS=Oryza... [more]
ARFO_ORYSJ1.737e-1137.61Auxin response factor 15 OS=Oryza sativa subsp. ja... [more]
ARFB_ORYSJ1.737e-1139.32Auxin response factor 2 OS=Oryza sativa subsp. jap... [more]
ARFC_ORYSJ2.963e-1135.65Auxin response factor 3 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC05072D11SK PhIFruit1 Citrus clementina cDNA clone C05072D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295460 ID=CX295460; Name=CX295460; organism=Citrus clementina; type=EST; length=711bp
GAGGGGGCCATTCCCTTCAGTCCAGGGCTTAAGAGAGTTCACTGATGACT
ATCTGGTGGTACACAGCTGCTTCCTCTTACCACTCATCATCAAAATTACA
ACAAACAACAACAACCACAAATGGGTTCTTGGCTATTAGGCAAAACAACC
ACAACAACGACAGCCGCCGAATTAGAAGATGTCTCAAACGAAGAAGAAGC
TGCAGCACCAACAGAAGAGCAGGCCATCATCATGCAGGAGACGAAGGATA
TTATTGGAGAAGGAGAAGCAGAAGAAGATCGTGTTCTTATTAGCTTGGAG
AAGGAACACATGTTTGACAAAGTTGTAACACCAAGCGATGTGGGTAAGCT
GAATCGTTTAGTCATTCCAAAGCAACACGCAGAAAAGTACTTCCCATTAG
ACTCTTCCTCGAACGAGAAAGGCCTTCTCTTGAATTTCGAGGATCGAAAT
GGAAAGCCATGGAGGTTCCGCTACTCTTACTGGAACAGCAGCCAAAGCTA
CGTCATGACCAAAGGCTGGAGCCGCTTTGTCAAGGACAAGAAACTTGATG
CCGGTGACGTTGTTTCCTTTCATAGGGGTGTTGGTGATTTGGCTAAAGGT
CGTCTTTTCATTGACTGGAGGAGAAGATCCCATCCTCCTGCTGCTGCTGC
TGCTTCGTTTTCTCGCCACCTGCCATTTTACCGGTCCATTCCTTGGAATC
CTTTGCTGATG
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