CX295474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22 Identity = 55/129 (42.64%), Postives = 83/129 (64.34%), Query Frame = -1 Query: 268 QAKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKD-ELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYV 651 Q ++ +F +RK A + T +H+ N+ITGVTKG+RYKM+ V++HFPI+ + + +EI NF GEK R +L GVTV KV+ +++++G DIE V++ AA I Q + D R F+DGIY+ Sbjct: 57 QVLVETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVGDR--VEIHNFIGEKAPRVAKVLPGVTV----KVQGRDVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYI 179
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22 Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = -1 Query: 247 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPIL 642 ++ + RK A + T +H+ N+ITGV +GYRYK++ +++HFPI S+ NK + IRNF GEK R + V V S ++++++G DIE V AA I + V ++D R F+DGIY+ EK L Sbjct: 56 VETFVADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKGEAL 184
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20 Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1 Query: 268 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-----DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYV 642 ++ +F R+ A + T SH+ N+I GV KGYRYK++ +Y+HFPI + + N+ + I+NF GEK D + I + VK ++++++G DIE V + AA I VK+KD R F DGIY+ Sbjct: 56 VETFFADRRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKS-------DRIAKIIGEDVKVTVKGEDIIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYI 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.876e-20 Identity = 48/136 (35.29%), Postives = 79/136 (58.09%), Query Frame = -1 Query: 238 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPILGEE 642 ++ F R+ A + ++H+ N+ TGVTKGYRY ++ +Y HFP+ + N ++I+N GEK +R+ ++ GV V VK ++++++G DIE V + AA I + D R F DGIY+ +K I E+ Sbjct: 55 VETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIYIYKKEVIGSEQ 184
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.159e-19 Identity = 55/126 (43.65%), Postives = 76/126 (60.32%), Query Frame = -1 Query: 256 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 630 F RK A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NF GEK R+ +L GVTV KVK E++++G D E V + AA I Q + D R F DGIY+ EK+ Sbjct: 59 FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.514e-19 Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = -1 Query: 427 QAKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDM 651 Q ++ WFG RK AAIRT SH+ N+I GVTKG+RYKMR VYAHFPIN ++ + + +EIRNF GEK VR V + Sbjct: 52 QLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.583e-19 Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = -1 Query: 256 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 621 RK A + T +H+ N+I GVT+G+ YK++ YAHFP+ S+ N IE NF GEK R+ +++GVTV S +++++ G D E V + AA I Q +K +D R F DGIY+ EK+ Sbjct: 62 RKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEKA 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.583e-19 Identity = 51/129 (39.53%), Postives = 79/129 (61.24%), Query Frame = -1 Query: 256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642 +++ + +K +A I T SH+ N+ITGV++G+ YKM+ YAHFP+ S+ N I+ NF GEK RK +++GV V S +++++ G D E + AA I Q V+ +D R F DGIY+ EK+ Sbjct: 56 VESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEKA 179
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.373e-19 Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = -1 Query: 256 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 630 F RK A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NF GEK R+ +L GVTV KVK E++++G D E + AA I Q + D R F DGIY+ EK+ Sbjct: 59 FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.373e-19 Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = -1 Query: 256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642 I+ F + +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NF GEK R ++DGVTV S +E+++ G + E V + AA I Q VK +D R F DGIY+ EK+ Sbjct: 55 IECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178 The following BLAST results are available for this feature:
BLAST of CX295474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 62
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX295474 ID=CX295474; Name=CX295474; organism=Citrus clementina; type=EST; length=660bpback to top |