CX295474

Overview
NameCX295474
Unique NameCX295474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22
Identity = 55/129 (42.64%), Postives = 83/129 (64.34%), Query Frame = -1
Query:  268 QAKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKD-ELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYV 651
            Q  ++ +F +RK  A + T  +H+ N+ITGVTKG+RYKM+ V++HFPI+  +  +   +EI NF GEK  R   +L GVTV    KV+  +++++G DIE V++ AA I Q   +   D R F+DGIY+
Sbjct:   57 QVLVETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVGDR--VEIHNFIGEKAPRVAKVLPGVTV----KVQGRDVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYI 179          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22
Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  247 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPIL 642
            ++ +   RK  A + T  +H+ N+ITGV +GYRYK++ +++HFPI  S+   NK + IRNF GEK  R   +   V V  S    ++++++G DIE V   AA I +   V ++D R F+DGIY+ EK   L
Sbjct:   56 VETFVADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKGEAL 184          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  268 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-----DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYV 642
            ++ +F  R+  A + T  SH+ N+I GV KGYRYK++ +Y+HFPI   + + N+ + I+NF GEK        D +  I  + VK     ++++++G DIE V + AA I     VK+KD R F DGIY+
Sbjct:   56 VETFFADRRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKS-------DRIAKIIGEDVKVTVKGEDIIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYI 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.876e-20
Identity = 48/136 (35.29%), Postives = 79/136 (58.09%), Query Frame = -1
Query:  238 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPILGEE 642
            ++  F  R+  A   + ++H+ N+ TGVTKGYRY ++ +Y HFP+   +  N   ++I+N  GEK +R+  ++ GV V     VK ++++++G DIE V + AA I     +   D R F DGIY+ +K  I  E+
Sbjct:   55 VETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIYIYKKEVIGSEQ 184          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.159e-19
Identity = 55/126 (43.65%), Postives = 76/126 (60.32%), Query Frame = -1
Query:  256 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +  +   IE  NF GEK  R+  +L GVTV    KVK  E++++G D E V + AA I Q   +   D R F DGIY+ EK+
Sbjct:   59 FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.514e-19
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = -1
Query:  427 QAKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDM 651
            Q ++  WFG RK  AAIRT  SH+ N+I GVTKG+RYKMR VYAHFPIN ++ +  + +EIRNF GEK VR V +
Sbjct:   52 QLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.583e-19
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = -1
Query:  256 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 621
            RK  A + T  +H+ N+I GVT+G+ YK++  YAHFP+  S+  N   IE  NF GEK  R+  +++GVTV  S    +++++ G D E V + AA I Q   +K +D R F DGIY+ EK+
Sbjct:   62 RKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEKA 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.583e-19
Identity = 51/129 (39.53%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642
            +++ +  +K +A I T  SH+ N+ITGV++G+ YKM+  YAHFP+  S+  N   I+  NF GEK  RK  +++GV V  S    +++++ G D E   + AA I Q   V+ +D R F DGIY+ EK+
Sbjct:   56 VESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEKA 179          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.373e-19
Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = -1
Query:  256 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +  +   IE  NF GEK  R+  +L GVTV    KVK  E++++G D E   + AA I Q   +   D R F DGIY+ EK+
Sbjct:   59 FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.373e-19
Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = -1
Query:  256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642
            I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NF GEK  R   ++DGVTV  S    +E+++ G + E V + AA I Q   VK +D R F DGIY+ EK+
Sbjct:   55 IECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
The following BLAST results are available for this feature:
BLAST of CX295474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL6_IGNH41.911e-2242.6450S ribosomal protein L6P OS=Ignicoccus hospitalis... [more]
RL6_DESK11.911e-2239.3950S ribosomal protein L6P OS=Desulfurococcus kamch... [more]
RL6_STAMF1.048e-2038.4650S ribosomal protein L6P OS=Staphylothermus marin... [more]
RL6_SULTO8.876e-2035.2950S ribosomal protein L6P OS=Sulfolobus tokodaii G... [more]
RL6_PYRAB1.159e-1943.6550S ribosomal protein L6P OS=Pyrococcus abyssi GN=... [more]
RL9_HAECO1.514e-1958.6760S ribosomal protein L9 (Fragment) OS=Haemonchus ... [more]
RL6_METJA2.583e-1941.8050S ribosomal protein L6P OS=Methanocaldococcus ja... [more]
RL6_META32.583e-1939.5350S ribosomal protein L6P OS=Methanococcus aeolicu... [more]
RL6_PYRHO3.373e-1942.8650S ribosomal protein L6P OS=Pyrococcus horikoshii... [more]
RL6_METM73.373e-1941.8650S ribosomal protein L6P OS=Methanococcus maripal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05072F01SK PhIFruit1 Citrus clementina cDNA clone C05072F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295474 ID=CX295474; Name=CX295474; organism=Citrus clementina; type=EST; length=660bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGCCAGATGCATAGCTAT
AAAATCCATACATATTTTGGGATGATAGCAATTGAAGACATAAAATTGAA
ATCTAGAACTCCCAAGTCCCAAATCCCAAATACAACCAAAAGCATGTCCT
CAACTCAAAGTAAGAGGCAAAATTAAAAAGATTTAAAAAAAAATTCATAA
CATTACTATGACAAGAAAATTCGAAAGCTAATCATCATTCTTCTCCAAGT
ATGGGGCTTTTCTCACTGACATAGATCCCATCAAGAAATTTCCTAATGTC
CTTGTTCTTCACATGGCATTTCTGATTGATTAGAGCAGCAAAGCGAGACA
CGAGTTCAATGTCATTTCCATCAAGAACGAGTTCATCCTTAACCTTATCG
GACCTAATGACGGTAACACCATCAAGCATATCCACTTTTCGAACCTTTTT
CTCTCCAAAAAAGTTACGGATCTCAATGGCCTTGTTATTGTTACCGATGG
AGGCGTTGATGGGAAAGTGAGCGTACACAAATCTCATCTTGTAGCGATAG
CCCTTGGTAACACCAGTGATGAGATTGCCAACATGGCTGAGGGCAGTTCT
GATGGCGGCGCTGGTCTTGCGAGAGCCAAACCAGGCATCGATCTTAGCTT
GCGCTTACCG
back to top