CX295474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19 Identity = 55/126 (43.65%), Postives = 76/126 (60.32%), Query Frame = -1 Query: 256 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 630 F RK A RT +H+ N+I GVT+G+ YK++ VY+HFPI+ + + IE NF GEK RK +L GVTV KV+ E++++G D E V + AA I Q + D R F DGIY+ EK+ Sbjct: 59 FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEKA 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19 Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = -1 Query: 256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642 I+ F + +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NF GEK R ++DGVTV S +E+++ G + E V + AA I Q VK +D R F DGIY+ EK+ Sbjct: 55 IECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 9.813e-19 Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = -1 Query: 256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642 I+ F + +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NF GEK R ++DGVTV S +++V+ G + E V + AA I Q VK +D R F DGIY+ EK+ Sbjct: 55 IECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18 Identity = 52/126 (41.27%), Postives = 76/126 (60.32%), Query Frame = -1 Query: 256 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 630 F +K A +RT +H+ N+I GVT+G++Y+++ VY+HFP+ + + IE NF GEK R+ +L GVTV KVK E+ ++G D E V + AA I Q + D R F DGIY+ EK+ Sbjct: 59 FPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18 Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = -1 Query: 256 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 621 ++T A + T SH+ N++TGV++GY Y M+ VYAHFPI + +K + I NF GE+K R +++ V ++ DKV VL G + E + + AA I Q C ++ +D R F DGIY++ K+ Sbjct: 60 KQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSKA 177
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.186e-18 Identity = 46/131 (35.11%), Postives = 77/131 (58.78%), Query Frame = -1 Query: 250 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPI 642 ++ F +R+ A + +SH+ N+ITGVTKGYRY ++ +Y HFP + + N ++I N GEK R+ +L+GV V +++V++G ++E V++ AA I + D R F DGI++ +K I Sbjct: 55 LETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNE--VQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI 180
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.186e-18 Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = -1 Query: 256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642 I+ F + +A + T SH+ N+I GVT G+ YK+ YAHFP+ S N + I NF GEK R ++DGVTV S +E+++ G + E V + AA I Q VK +D R F DGIY+ EK+ Sbjct: 55 IECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.855e-18 Identity = 51/132 (38.64%), Postives = 82/132 (62.12%), Query Frame = -1 Query: 250 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPI 642 ++++F + A + H+ N+I GV G+RYK++ +Y+HFPIN + +K I I NF GEK +R ++ GV V +VK +++++G D+E V++ AA I VK+KD RKF+DGIY+ E+ I Sbjct: 56 VESFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.870e-18 Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = -1 Query: 256 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 630 F +K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + IE NF GEK R+ +L GVTV + E++++G D E V + AA I Q + D R F DGIY+ EK+ Sbjct: 59 FPRKKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.870e-18 Identity = 52/126 (41.27%), Postives = 74/126 (58.73%), Query Frame = -1 Query: 256 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 630 F +K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + IE NF GEK R+ +L GVTV KV+ E+ ++G D E V + AA I Q + D R F DGIY+ EK+ Sbjct: 59 FPRKKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178 The following BLAST results are available for this feature:
BLAST of CX295474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 62
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295474 ID=CX295474; Name=CX295474; organism=Citrus clementina; type=EST; length=660bpback to top |