CX295474

Overview
NameCX295474
Unique NameCX295474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig262 contig Ccv1_Contig262:236..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 55/126 (43.65%), Postives = 76/126 (60.32%), Query Frame = -1
Query:  256 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            F  RK  A  RT  +H+ N+I GVT+G+ YK++ VY+HFPI+  +  +   IE  NF GEK  RK  +L GVTV    KV+  E++++G D E V + AA I Q   +   D R F DGIY+ EK+
Sbjct:   59 FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEKA 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = -1
Query:  256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642
            I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NF GEK  R   ++DGVTV  S    +E+++ G + E V + AA I Q   VK +D R F DGIY+ EK+
Sbjct:   55 IECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.813e-19
Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = -1
Query:  256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642
            I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NF GEK  R   ++DGVTV  S    +++V+ G + E V + AA I Q   VK +D R F DGIY+ EK+
Sbjct:   55 IECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18
Identity = 52/126 (41.27%), Postives = 76/126 (60.32%), Query Frame = -1
Query:  256 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            F  +K  A +RT  +H+ N+I GVT+G++Y+++ VY+HFP+   +  +   IE  NF GEK  R+  +L GVTV    KVK  E+ ++G D E V + AA I Q   +   D R F DGIY+ EK+
Sbjct:   59 FPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = -1
Query:  256 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 621
            ++T A + T  SH+ N++TGV++GY Y M+ VYAHFPI   +   +K + I NF GE+K R  +++    V ++ DKV    VL G + E + + AA I Q C ++ +D R F DGIY++ K+
Sbjct:   60 KQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSKA 177          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.186e-18
Identity = 46/131 (35.11%), Postives = 77/131 (58.78%), Query Frame = -1
Query:  250 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPI 642
            ++  F +R+  A   + +SH+ N+ITGVTKGYRY ++ +Y HFP +  +  N   ++I N  GEK  R+  +L+GV V       +++V++G ++E V++ AA I     +   D R F DGI++ +K  I
Sbjct:   55 LETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNE--VQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI 180          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.186e-18
Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = -1
Query:  256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642
            I+  F  +  +A + T  SH+ N+I GVT G+ YK+   YAHFP+  S   N   + I NF GEK  R   ++DGVTV  S    +E+++ G + E V + AA I Q   VK +D R F DGIY+ EK+
Sbjct:   55 IECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.855e-18
Identity = 51/132 (38.64%), Postives = 82/132 (62.12%), Query Frame = -1
Query:  250 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPI 642
            ++++F   +  A +     H+ N+I GV  G+RYK++ +Y+HFPIN  +   +K I I NF GEK +R   ++ GV V    +VK  +++++G D+E V++ AA I     VK+KD RKF+DGIY+ E+  I
Sbjct:   56 VESFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.870e-18
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = -1
Query:  256 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +  +   IE  NF GEK  R+  +L GVTV     +  E++++G D E V + AA I Q   +   D R F DGIY+ EK+
Sbjct:   59 FPRKKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.870e-18
Identity = 52/126 (41.27%), Postives = 74/126 (58.73%), Query Frame = -1
Query:  256 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +  +   IE  NF GEK  R+  +L GVTV    KV+  E+ ++G D E V + AA I Q   +   D R F DGIY+ EK+
Sbjct:   59 FPRKKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
The following BLAST results are available for this feature:
BLAST of CX295474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL6_PYRFU4.405e-1943.6550S ribosomal protein L6P OS=Pyrococcus furiosus G... [more]
RL6_METM54.405e-1941.8650S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METMP9.813e-1941.8650S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_PYRKO1.282e-1841.2750S ribosomal protein L6P OS=Pyrococcus kodakaraen... [more]
RL6_UNCMA1.674e-1839.8450S ribosomal protein L6P OS=Uncultured methanogen... [more]
RL6_SULSO2.186e-1835.1150S ribosomal protein L6P OS=Sulfolobus solfataric... [more]
RL6_METM62.186e-1841.0950S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_AERPE2.855e-1838.6450S ribosomal protein L6P OS=Aeropyrum pernix GN=r... [more]
RL6_THEON4.870e-1840.0050S ribosomal protein L6P OS=Thermococcus onnurine... [more]
RL6_THEGJ4.870e-1841.2750S ribosomal protein L6P OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionC05072F01SK PhIFruit1 Citrus clementina cDNA clone C05072F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295474 ID=CX295474; Name=CX295474; organism=Citrus clementina; type=EST; length=660bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGCCAGATGCATAGCTAT
AAAATCCATACATATTTTGGGATGATAGCAATTGAAGACATAAAATTGAA
ATCTAGAACTCCCAAGTCCCAAATCCCAAATACAACCAAAAGCATGTCCT
CAACTCAAAGTAAGAGGCAAAATTAAAAAGATTTAAAAAAAAATTCATAA
CATTACTATGACAAGAAAATTCGAAAGCTAATCATCATTCTTCTCCAAGT
ATGGGGCTTTTCTCACTGACATAGATCCCATCAAGAAATTTCCTAATGTC
CTTGTTCTTCACATGGCATTTCTGATTGATTAGAGCAGCAAAGCGAGACA
CGAGTTCAATGTCATTTCCATCAAGAACGAGTTCATCCTTAACCTTATCG
GACCTAATGACGGTAACACCATCAAGCATATCCACTTTTCGAACCTTTTT
CTCTCCAAAAAAGTTACGGATCTCAATGGCCTTGTTATTGTTACCGATGG
AGGCGTTGATGGGAAAGTGAGCGTACACAAATCTCATCTTGTAGCGATAG
CCCTTGGTAACACCAGTGATGAGATTGCCAACATGGCTGAGGGCAGTTCT
GATGGCGGCGCTGGTCTTGCGAGAGCCAAACCAGGCATCGATCTTAGCTT
GCGCTTACCG
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