CX295474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17 Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1 Query: 256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642 +++ F + +A + T SH+ N+I GV++G+ YK+ YAHFP+ + N I+ NF GEK R +++GVTV KV +E+++ G + E V + AA I Q VK +D R F DGIY+ EK+ Sbjct: 55 VESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17 Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1 Query: 256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642 +++ F + +A + T SH+ N+I GV++G+ YK+ YAHFP+ + N I+ NF GEK R +++GVTV KV +E+++ G + E V + AA I Q VK +D R F DGIY+ EK+ Sbjct: 55 VESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.185e-17 Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = -1 Query: 256 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 621 + ++ + T SH N+ TGVTKGY Y M+ VY+HFPI + + +EI NF GEK R +L G TV KV DE+ + G D E+V AA I + ++++D R F DGIY+ +S Sbjct: 58 KAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYIVSRS 174
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.200e-16 Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = -1 Query: 259 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 609 A + T +H+ N+I GVT G+ Y+MR VY+HFPI + + AI NF GE+K R ++ V V + KDE+++ G D E V + A I Q V+ D+R F DGIY+ EK Sbjct: 64 AMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKVADGKVAIS--NFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16 Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = -1 Query: 259 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 642 +D+ +K A + T SH+ N++ GV G+ Y M+ VY+HFP+ + N K I NF GEKK R ++L +V S DE+++ G + E V + AA I QK +K D R F DGIY+ +K Sbjct: 53 VDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKV--NGKKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIYIVDK 175
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.490e-16 Identity = 49/129 (37.98%), Postives = 73/129 (56.59%), Query Frame = -1 Query: 259 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 642 ++ F +K A I T +H+ N+ITGVT+G+RY+M+ VYAHFP++ + + IE NF GE+ R + V +VK DE+ + G + E V + A I Q +K +D R F DGIY+ K Sbjct: 54 LEVKFPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16 Identity = 42/131 (32.06%), Postives = 74/131 (56.49%), Query Frame = -1 Query: 250 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPI 642 ++ F R+ A + + ++H+ N+ITG GYRY ++ + HFPI+ + + +++ N GEK +R+ +L GV V +++V++G+DI V++ AA I + D R F DGIY+ +K I Sbjct: 58 LETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVI 183
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3) HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16 Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = -1 Query: 259 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 618 KT + I T SH+ N+ GVT+G+ Y M Y+HFP+ ++ + IE NF GEK R+ + G T + D +EL + G DIE V + AA I Q + +KD+R F DG+Y++ K Sbjct: 58 KTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15 Identity = 52/135 (38.52%), Postives = 76/135 (56.30%), Query Frame = -1 Query: 256 R*AQAKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 660 R + +DA ++ A + T SH+ NLI GV++G+ KM VYAHFP+ + K + I NF GEKK R +L G T ++ +E+V+ G + E V + AA I QK +K D R F DGIY+ +K+ Sbjct: 47 REGEVVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKPRIAKIL-GETKVKVS--GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3) HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15 Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = -1 Query: 259 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 618 KT + + T SHV N+ GV++G+ YK+ Y+HFP+ + + + I+NF GEK R+ + V+ D +E+ L G IE V + AA I Q V +KD R F DG+Y+ EK Sbjct: 58 KTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172 The following BLAST results are available for this feature:
BLAST of CX295474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 62
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295474 ID=CX295474; Name=CX295474; organism=Citrus clementina; type=EST; length=660bpback to top |