CX295474

Overview
NameCX295474
Unique NameCX295474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig262 contig Ccv1_Contig262:236..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642
            +++ F  +  +A + T  SH+ N+I GV++G+ YK+   YAHFP+  +   N   I+  NF GEK  R   +++GVTV    KV  +E+++ G + E V + AA I Q   VK +D R F DGIY+ EK+
Sbjct:   55 VESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642
            +++ F  +  +A + T  SH+ N+I GV++G+ YK+   YAHFP+  +   N   I+  NF GEK  R   +++GVTV    KV  +E+++ G + E V + AA I Q   VK +D R F DGIY+ EK+
Sbjct:   55 VESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.185e-17
Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = -1
Query:  256 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 621
            +  ++ + T  SH  N+ TGVTKGY Y M+ VY+HFPI   +    + +EI NF GEK  R   +L G TV    KV  DE+ + G D E+V   AA I +   ++++D R F DGIY+  +S
Sbjct:   58 KAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYIVSRS 174          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.200e-16
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = -1
Query:  259 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 609
            A + T  +H+ N+I GVT G+ Y+MR VY+HFPI   + +   AI   NF GE+K R   ++  V V   +  KDE+++ G D E V +  A I Q   V+  D+R F DGIY+ EK
Sbjct:   64 AMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKVADGKVAIS--NFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16
Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = -1
Query:  259 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 642
            +D+    +K  A + T  SH+ N++ GV  G+ Y M+ VY+HFP+   +  N K   I NF GEKK R  ++L   +V  S    DE+++ G + E V + AA I QK  +K  D R F DGIY+ +K
Sbjct:   53 VDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKV--NGKKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIYIVDK 175          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.490e-16
Identity = 49/129 (37.98%), Postives = 73/129 (56.59%), Query Frame = -1
Query:  259 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 642
            ++  F  +K  A I T  +H+ N+ITGVT+G+RY+M+ VYAHFP++  +  +   IE  NF GE+  R    +    V    +VK DE+ + G + E V +  A I Q   +K +D R F DGIY+  K
Sbjct:   54 LEVKFPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 42/131 (32.06%), Postives = 74/131 (56.49%), Query Frame = -1
Query:  250 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPI 642
            ++  F  R+  A + + ++H+ N+ITG   GYRY ++ +  HFPI+  +  +   +++ N  GEK +R+  +L GV V       +++V++G+DI  V++ AA I     +   D R F DGIY+ +K  I
Sbjct:   58 LETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVI 183          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = -1
Query:  259 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 618
            KT + I T  SH+ N+  GVT+G+ Y M   Y+HFP+  ++  +   IE  NF GEK  R+   + G T +  D   +EL + G DIE V + AA I Q   + +KD+R F DG+Y++ K
Sbjct:   58 KTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15
Identity = 52/135 (38.52%), Postives = 76/135 (56.30%), Query Frame = -1
Query:  256 R*AQAKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 660
            R  +  +DA    ++  A + T  SH+ NLI GV++G+  KM  VYAHFP+   +    K + I NF GEKK R   +L G T ++     +E+V+ G + E V + AA I QK  +K  D R F DGIY+ +K+
Sbjct:   47 REGEVVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKPRIAKIL-GETKVKVS--GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = -1
Query:  259 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 618
            KT + + T  SHV N+  GV++G+ YK+   Y+HFP+   +    + + I+NF GEK  R+  +     V+  D   +E+ L G  IE V + AA I Q   V +KD R F DG+Y+ EK
Sbjct:   58 KTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172          
The following BLAST results are available for this feature:
BLAST of CX295474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL6_METVS1.417e-1738.4650S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_METVA1.417e-1738.4650S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_METHJ9.185e-1740.6550S ribosomal protein L6P OS=Methanospirillum hung... [more]
RL6_METTP1.200e-1641.0350S ribosomal protein L6P OS=Methanosaeta thermoph... [more]
RL6_METBU2.046e-1638.2850S ribosomal protein L6P OS=Methanococcoides burt... [more]
RL6_METTH3.490e-1637.9850S ribosomal protein L6P OS=Methanobacterium ther... [more]
RL6_SULAC5.954e-1632.0650S ribosomal protein L6P OS=Sulfolobus acidocalda... [more]
RL6_HALMA5.954e-1639.1750S ribosomal protein L6P OS=Haloarcula marismortu... [more]
RL6_METMA1.326e-1538.5250S ribosomal protein L6P OS=Methanosarcina mazei ... [more]
RL6_HALSA1.326e-1537.5050S ribosomal protein L6P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionC05072F01SK PhIFruit1 Citrus clementina cDNA clone C05072F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295474 ID=CX295474; Name=CX295474; organism=Citrus clementina; type=EST; length=660bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGCCAGATGCATAGCTAT
AAAATCCATACATATTTTGGGATGATAGCAATTGAAGACATAAAATTGAA
ATCTAGAACTCCCAAGTCCCAAATCCCAAATACAACCAAAAGCATGTCCT
CAACTCAAAGTAAGAGGCAAAATTAAAAAGATTTAAAAAAAAATTCATAA
CATTACTATGACAAGAAAATTCGAAAGCTAATCATCATTCTTCTCCAAGT
ATGGGGCTTTTCTCACTGACATAGATCCCATCAAGAAATTTCCTAATGTC
CTTGTTCTTCACATGGCATTTCTGATTGATTAGAGCAGCAAAGCGAGACA
CGAGTTCAATGTCATTTCCATCAAGAACGAGTTCATCCTTAACCTTATCG
GACCTAATGACGGTAACACCATCAAGCATATCCACTTTTCGAACCTTTTT
CTCTCCAAAAAAGTTACGGATCTCAATGGCCTTGTTATTGTTACCGATGG
AGGCGTTGATGGGAAAGTGAGCGTACACAAATCTCATCTTGTAGCGATAG
CCCTTGGTAACACCAGTGATGAGATTGCCAACATGGCTGAGGGCAGTTCT
GATGGCGGCGCTGGTCTTGCGAGAGCCAAACCAGGCATCGATCTTAGCTT
GCGCTTACCG
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