CX295493

Overview
NameCX295493
Unique NameCX295493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:445..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.539e-50
Identity = 92/162 (56.79%), Postives = 117/162 (72.22%), Query Frame = 2
Query:   26 YC--DPNYPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 499
            YC     +PC    KYYGRGPIQ+++NYNY  CG  +G  ++LLNNPDL+ATN     V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A RLPGYG+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  179 YCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIG--QNLLNNPDLVATN----AVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.456e-49
Identity = 94/164 (57.32%), Postives = 118/164 (71.95%), Query Frame = 2
Query:   20 SDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 499
            S YC  +  +PC    +YYGRGPIQ++WNYNY +CG  +G   DLLNNPDL+AT+     V+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  AGRLPGYG  TNIINGG+ECG G +  V++RIGF+  +C  FGI  GDNLDC +QRP+G +L   S+
Sbjct:  159 STYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIG--VDLLNNPDLVATDP----VISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.902e-49
Identity = 95/164 (57.93%), Postives = 115/164 (70.12%), Query Frame = 2
Query:   20 SDYC--DPNYPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 499
            S YC  DPNYPC  GK Y+GRGP+QL+WNYNY +CG  +G   DLLNNPDLL+++      +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR  GYG+ TNIINGG+ECG G N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  145 SSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIG--VDLLNNPDLLSSDP----TISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.238e-49
Identity = 92/163 (56.44%), Postives = 120/163 (73.62%), Query Frame = 2
Query:   14 ASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMA 490
            A++ YC P+  +PC    KY+GRGPIQL++NYNY   GE +G  EDLLNNP+L+A++     V+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ AGR+PGYG+ TNIINGG+ECG+G +D V NRIGF+  +C   GI  G NLDC +QRP+   L A
Sbjct:  176 ATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIG--EDLLNNPELVASDP----VVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.441e-49
Identity = 90/153 (58.82%), Postives = 111/153 (72.55%), Query Frame = 2
Query:   26 YCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 472
            YC+P   +PC    KYYGRGPIQ+T+NYNY   G+ +G   DLLNNPDL+A++      +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  AGR+PGYG  TNIINGG+ECG+G +D V +RIGF+  +C   G+  GDNLDC NQRPY
Sbjct:  171 YCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIG--SDLLNNPDLVASD----ATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.747e-48
Identity = 91/163 (55.83%), Postives = 118/163 (72.39%), Query Frame = 2
Query:   23 DYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 499
            DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFK+A+WFWMT Q PKPSCH+VII  W PS+ D  A RLPG+G+ TNIINGG+ECG G ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  172 DYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDP----VISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.685e-48
Identity = 92/167 (55.09%), Postives = 117/167 (70.06%), Query Frame = 2
Query:   20 SDYCD--PNYPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 508
            S YC   P +PC    +YYGRGPIQ++WNYNY +CG  +G   DLLN PDL+AT+     V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG G +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L+   + +S
Sbjct:  167 STYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIG--VDLLNKPDLVATDS----VISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.685e-48
Identity = 88/156 (56.41%), Postives = 113/156 (72.44%), Query Frame = 2
Query:   17 SSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 472
            SS+YC P+  +PC     YYGRGP+QL+WNYNY +CG  +G   DLLNNPDL++ +     V++FK+AIWFWMT Q PKPSCH VI+ +W+PS  D  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+ PG NLDC NQR +
Sbjct:  162 SSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIG--SDLLNNPDLVSNDP----VIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.044e-47
Identity = 92/167 (55.09%), Postives = 116/167 (69.46%), Query Frame = 2
Query:   20 SDYCD--PNYPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 508
            S YC   P +PC    +YYGRGPIQ++WNYNY +CG  +G   DLLN PDL+AT+     V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG G +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L    + +S
Sbjct:  166 SAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIG--VDLLNKPDLVATDS----VISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.571e-46
Identity = 89/152 (58.55%), Postives = 111/152 (73.03%), Query Frame = 2
Query:   26 YCDP-NYPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 472
            YC P ++PC    KYYGRGPIQLT NYNY   G+ +   EDL+NNPDLL+TN      +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIINGGIECG+G ++ V +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:  174 YCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIK--EDLINNPDLLSTNP----TVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
The following BLAST results are available for this feature:
BLAST of CX295493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI3_TOBAC8.539e-5056.79Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_PEA1.456e-4957.32Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_GOSHI1.902e-4957.93Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI9_ORYSJ4.238e-4956.44Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_ORYSJ9.441e-4958.82Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_SOLTU2.747e-4855.83Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIT_PHAVU4.685e-4855.09Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_BRANA4.685e-4856.41Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI5_PHAVU1.044e-4755.09Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIX_PEA2.571e-4658.55Endochitinase OS=Pisum sativum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05072G08SK PhIFruit1 Citrus clementina cDNA clone C05072G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295493 ID=CX295493; Name=CX295493; organism=Citrus clementina; type=EST; length=675bp
GAGGGTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTC
GAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAAT
TACTTACGGTGCGGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAA
TCCAGACCTTCTTGCTACTAATGATAAAGAAGGACGAGTACTATCATTCA
AGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGC
CACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGC
CGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAA
TTGAATGTGGCTACGGTGGGAATGACGCTGTACGTAACCGTATTGGGTTC
TTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGA
TTGCTCCAACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGT
GATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTA
ATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAACTGTTACGC
TCTTATTGTAAGTAAATTAAATAAGACTGATCCAACATGGATCAATGAGT
CTTCTCCAAAAAAAAAAAAAAAAAA
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