CX295493

Overview
NameCX295493
Unique NameCX295493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:445..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 176.407 bits (446), Expect = 1.194e-43
Identity = 87/157 (55.41%), Postives = 112/157 (71.34%), Query Frame = 2
Query:   14 ASSDYCDPN--YPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 472
            A+S+YC P+  +PC  GK YYGRGPIQL+ NYNY   G  +G   DLL NPDL+AT+      +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+G +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  167 ATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIG--VDLLRNPDLVATDP----TVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.660e-43
Identity = 82/140 (58.57%), Postives = 102/140 (72.86%), Query Frame = 2
Query:   56 KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 475
            +YYGRGPIQLT   NY + G  +G  ++L+NNPDL+AT+      +SFK+AIWFWMT Q  KPS H+VII  W PSA D  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:  118 RYYGRGPIQLTNRNNYEKAGTAIG--QELVNNPDLVATD----ATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.660e-43
Identity = 87/157 (55.41%), Postives = 111/157 (70.70%), Query Frame = 2
Query:   14 ASSDYCDPN--YPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 472
            A+S+YC P+  +PC  GK YYGRGPIQL+ NYNY   G  +G   DLL NPDL+AT+      +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+G +  V +RIGF+  +C    +  G+NLDC NQRP+
Sbjct:  170 ATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIG--VDLLRNPDLVATDP----TVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.842e-42
Identity = 81/153 (52.94%), Postives = 108/153 (70.59%), Query Frame = 2
Query:   26 YCDPNY--PCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYG-GNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 475
            YC  N   P    YYGRGPIQLT  YNY   G+ LG   DL+NNPDL++++     V++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG G   D  ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:  108 YCRVNEITPSDPPYYGRGPIQLTHKYNYQLAGDALGL--DLVNNPDLVSSDP----VVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.553e-42
Identity = 83/143 (58.04%), Postives = 103/143 (72.03%), Query Frame = 2
Query:    2 RVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCG 418
            R   +  DYC P+  +PC    KY+GRGPIQ++ NYNY  CG  +G   DLLNNPDL+AT+     V+SFKSAIWFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +CG
Sbjct:  165 REQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIG--VDLLNNPDLVATDP----VISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.490e-41
Identity = 80/138 (57.97%), Postives = 99/138 (71.74%), Query Frame = 2
Query:   59 YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 472
            +YGRGPIQLT   NY   G+ +G  +DL+NNPDL+AT+      +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG G N  V +RIGF+  +C    + PGDNLDC +QR +
Sbjct:  113 FYGRGPIQLTGQSNYDLAGQAIG--QDLVNNPDLVATD----ATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.248e-41
Identity = 82/138 (59.42%), Postives = 97/138 (70.29%), Query Frame = 2
Query:   59 YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 472
            YYGRGPIQLT   NY   G  LG   DL+ NPDL++T+     V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G   G NLDC NQR +
Sbjct:  128 YYGRGPIQLTGQSNYQAAGNALGL--DLVGNPDLVSTD----AVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.245e-41
Identity = 80/139 (57.55%), Postives = 98/139 (70.50%), Query Frame = 2
Query:   56 KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 472
            +YYGRGPIQLT   NY + G  +   +DL+NNPDL+AT+      +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PGDNLDC NQR +
Sbjct:  118 RYYGRGPIQLTNQNNYEKAGNAIR--QDLVNNPDLVATD----ATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.785e-39
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 2
Query:   17 SSDYCDP----NYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 472
            +SDYCDP    +YPC   YYGRGP+QL WNYNY  CG  LG  ++LL+ P+ +AT+     VLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC   G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  154 NSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLG--QNLLDEPEKVATDP----VLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.857e-39
Identity = 78/138 (56.52%), Postives = 95/138 (68.84%), Query Frame = 2
Query:   59 YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 472
            YYGRGPIQLT   NY   G+ +   +DL+NNPDL+AT+      +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG G N  V +RIG++        + PGDNLDC NQR +
Sbjct:  120 YYGRGPIQLTGQSNYDLAGKAIE--QDLVNNPDLVATD----ATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
The following BLAST results are available for this feature:
BLAST of CX295493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI1_HORVU1.194e-4355.4126 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIQ_TOBAC2.660e-4358.57Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIA_SECCE2.660e-4355.41Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI11_ORYSJ3.842e-4252.94Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI4_SOLTU6.553e-4258.04Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_SOLLC2.490e-4157.97Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ4.248e-4159.42Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_TOBAC7.245e-4157.55Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_POPTR1.785e-3949.68Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIT_PETHY8.857e-3956.52Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05072G08SK PhIFruit1 Citrus clementina cDNA clone C05072G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295493 ID=CX295493; Name=CX295493; organism=Citrus clementina; type=EST; length=675bp
GAGGGTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTC
GAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAAT
TACTTACGGTGCGGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAA
TCCAGACCTTCTTGCTACTAATGATAAAGAAGGACGAGTACTATCATTCA
AGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGC
CACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGC
CGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAA
TTGAATGTGGCTACGGTGGGAATGACGCTGTACGTAACCGTATTGGGTTC
TTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGA
TTGCTCCAACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGT
GATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTA
ATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAACTGTTACGC
TCTTATTGTAAGTAAATTAAATAAGACTGATCCAACATGGATCAATGAGT
CTTCTCCAAAAAAAAAAAAAAAAAA
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