CX295493

Overview
NameCX295493
Unique NameCX295493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:445..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.050e-20
Identity = 52/150 (34.67%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   17 SSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 454
            +++YC  +  YPC    +Y+GRGP+QL+WNYNY+  G+ L    D LN+PD++  +     ++SFK+++WFW+     +     VI+D  +            G+G T  IINGG EC       +  R+G++  +C + G+ PG+NL C
Sbjct:  124 ANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHF--DGLNDPDIVGRDP----IISFKTSLWFWI-----RKGVQYVILDPNQ------------GFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.050e-20
Identity = 54/155 (34.84%), Postives = 81/155 (52.26%), Query Frame = 2
Query:    5 VGAASSDYCDPN---YPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 454
            +   S +YCD     +PC  GK YYGRGP+Q++WN+NY   G+ +G   D L +PD +A +     VL+F++A+W+W        + H+  +                G+G T   ING +EC      AV NR+ ++  FC +FG+ PG NL C
Sbjct:  142 IDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGF--DGLGDPDAVARSP----VLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.051e-19
Identity = 57/152 (37.50%), Postives = 80/152 (52.63%), Query Frame = 2
Query:   17 SSDYCDPN---YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRN-RIGFFTTFCGKFGIQPGDNLDC 454
            S+ YCDP    +PC    KYYGRGP+Q++WNYNY   G  +G   D L +P  +A +     V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C + G+ PG NL C
Sbjct:  146 SNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGF--DGLGDPGRVARD----AVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.018e-18
Identity = 55/161 (34.16%), Postives = 78/161 (48.45%), Query Frame = 2
Query:    5 VGAASSDYCDPN----YPCRGK--YYGRGPIQLTWNYNYLRCG-----EGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 454
            +  AS DYCD      YPC     Y+GRGPIQL+WN+NY   G     +GLG  E + N+            V+SFK+A+W+WM    P       +I++              G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:  142 IDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDV-----------VVSFKTALWYWMQHVRP-------VINQ--------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 54/152 (35.53%), Postives = 79/152 (51.97%), Query Frame = 2
Query:   17 SSDYCDPN---YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRN-RIGFFTTFCGKFGIQPGDNLDC 454
            S+ YCD +   +PC    KYYGRGP+Q++WNYNY   G  +G     L +P+ +A    +  V++FK+A+WFWM                     N+V+     G+G T   ING +EC  G N A  N R+G++  +C +  + PG NL C
Sbjct:  157 SNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNG--LADPNRVA----QDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECN-GNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CX295493 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 2
Query:  221 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 358
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CX295493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_DIOJA7.050e-2034.67Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI6_ORYSJ7.050e-2034.84Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE2.051e-1937.50Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU1.018e-1834.16Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIA_MAIZE6.599e-1835.53Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ARAHY1.574e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionC05072G08SK PhIFruit1 Citrus clementina cDNA clone C05072G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295493 ID=CX295493; Name=CX295493; organism=Citrus clementina; type=EST; length=675bp
GAGGGTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTC
GAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAAT
TACTTACGGTGCGGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAA
TCCAGACCTTCTTGCTACTAATGATAAAGAAGGACGAGTACTATCATTCA
AGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGC
CACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGC
CGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAA
TTGAATGTGGCTACGGTGGGAATGACGCTGTACGTAACCGTATTGGGTTC
TTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGA
TTGCTCCAACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGT
GATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTA
ATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAACTGTTACGC
TCTTATTGTAAGTAAATTAAATAAGACTGATCCAACATGGATCAATGAGT
CTTCTCCAAAAAAAAAAAAAAAAAA
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