CX295494

Overview
NameCX295494
Unique NameCX295494
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295494_ssr571 microsatellite CX295494_ssr571:571..582. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATM_HORSE (Aspartate aminotransferase, mitochondrial OS=Equus caballus GN=GOT2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGERVGA ++VCK AD A RVESQ+K++IRP+YSNPP++GA
Sbjct:  250 KNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPLYSNPPLNGA 295          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATM_RAT (Aspartate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Got2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGERVGA ++VCK A+ A RVESQ+K++IRP+YSNPP++GA
Sbjct:  279 KNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGA 324          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATM_MOUSE (Aspartate aminotransferase, mitochondrial OS=Mus musculus GN=Got2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGERVGA ++VCK A+ A RVESQ+K++IRP+YSNPP++GA
Sbjct:  279 KNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGA 324          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AAT5_ARATH (Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KNLGLY ER+GA+++VC +AD A RV+SQ+K + RPMYSNPP+HGA
Sbjct:  298 KNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPPVHGA 343          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATM_XENTR (Aspartate aminotransferase, mitochondrial OS=Xenopus tropicalis GN=got2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGERVGA ++VC  A+ A RVESQ+K++IRPMYSNPP++GA
Sbjct:  276 KNMGLYGERVGAFTVVCSDAEEAKRVESQLKILIRPMYSNPPLNGA 321          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AAT4_ARATH (Aspartate aminotransferase, cytoplasmic isozyme 2 OS=Arabidopsis thaliana GN=ASP4 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGER+G+L+IVC + DVA +VE+QV LV+RPMY  PPIHGA
Sbjct:  249 KNMGLYGERIGSLTIVCTSEDVAKKVENQVLLVVRPMYLTPPIHGA 294          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATM_CHICK (Aspartate aminotransferase, mitochondrial OS=Gallus gallus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 30/46 (65.22%), Postives = 41/46 (89.13%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHGA 141
            KN+GLYGER GA +++C+ A+ A RVESQ+K++IRPMYSNPP++GA
Sbjct:  272 KNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGA 317          
BLAST of CX295494 vs. ExPASy Swiss-Prot
Match: AATM_DICDI (Aspartate aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=aatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    4 KNLGLYGERVGALSIVCKTADVAGRVESQVKLVIRPMYSNPPIHG-----AILRDR 156
            KN GLYGER+GA SI+ +T+D A  VESQ+K++IRPMYSNPP++G     AIL+D+
Sbjct:  273 KNFGLYGERIGAFSILTETSDQALNVESQLKILIRPMYSNPPVYGARLVQAILKDK 328          
The following BLAST results are available for this feature:
BLAST of CX295494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
AATM_HORSE4.118e-1371.74Aspartate aminotransferase, mitochondrial OS=Equus... [more]
AATM_RAT7.025e-1369.57Aspartate aminotransferase, mitochondrial OS=Rattu... [more]
AATM_MOUSE7.025e-1369.57Aspartate aminotransferase, mitochondrial OS=Mus m... [more]
AAT5_ARATH7.025e-1367.39Aspartate aminotransferase, chloroplastic OS=Arabi... [more]
AATM_XENTR1.198e-1269.57Aspartate aminotransferase, mitochondrial OS=Xenop... [more]
AAT4_ARATH2.044e-1269.57Aspartate aminotransferase, cytoplasmic isozyme 2 ... [more]
AATM_CHICK3.486e-1265.22Aspartate aminotransferase, mitochondrial OS=Gallu... [more]
AATM_DICDI7.767e-1260.71Aspartate aminotransferase, mitochondrial OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionC05072G09SK PhIFruit1 Citrus clementina cDNA clone C05072G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295494 ID=CX295494; Name=CX295494; organism=Citrus clementina; type=EST; length=707bp
AGGAAGAACTTGGGTCTTTATGGGGAACGTGTTGGGGCTCTAAGCATTGT
CTGCAAGACAGCTGATGTGGCAGGCAGGGTTGAGAGCCAGGTGAAACTTG
TGATCAGGCCCATGTATTCAAATCCACCCATTCACGGCGCCATTTTGAGG
GACAGGTAAATGTTCCAAGCTTTTCTTCATACCTGGCTCAATTAACTTGA
AAAAGAAGAGTATGAACTGAGAAGCTAAACTATTGAAAGCAGAATTCTTT
ATATTCTTTTCTCAAGGGGAGCTTATATTAATCATCAAAACCGATCAAGT
TATAGGCAGATAATTAACTGGATACAATGTTGTCACTGTGTACATTTTAA
CTGGATGACAATGGAAAACATCAGTGACATTCTTTCTGGAAATCATGCTT
TCTCAAAATATTCCTTGAGTTTTTGACTGCTTCATGATCAGGGACTTGTT
CAATGAGTGGACTTTTGAGTTGAAGGCAATGGCTGATCGCATCATCAGCA
CGAGGCAGAAACTTTCTGATGCCTTACGTGCTAGATGTAAGAGCATTTGT
TGAGTTTTATCTGTTTTCCGTATTTATTTATTTTCTCATATGCGTATGTC
AGCTCTATTATGATCGTTCCCGTCCCTTAATTGATCATGCCGTAAGCGTC
CAGTTTCTTAAATTGCGTCCTCAACTTCTGTGAGTTCAGAACATCCATTA
CCTCTCT
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