CX295496

Overview
NameCX295496
Unique NameCX295496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:432..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.297e-46
Identity = 89/155 (57.42%), Postives = 110/155 (70.97%), Query Frame = 3
Query:   33 SDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 485
            SDYC P+  +PC    KYYGRGPIQL++N+NY   G  +G   DLL+NPDL+AT+      +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG+G +D V NRIGF+  +CG FGI  G NLDC NQRP+
Sbjct:  181 SDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIG--VDLLSNPDLVATD----ATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.345e-46
Identity = 90/171 (52.63%), Postives = 120/171 (70.18%), Query Frame = 3
Query:   12 REVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 512
            RE G+  + YC P+  +PC    KYYGRGPIQ+++NYNY + G+ +G   DL+NNPDL+AT+     V+SFK+A WFWMT Q PKPSCH VI   W PS  D +AGRLPG+G+ TNIINGG+ECG G    V++RIGF+  +C    +  G+NLDC+NQRP+G  L+  ++
Sbjct:  151 REQGSPGA-YCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIG--VDLVNNPDLVATD----AVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.253e-45
Identity = 81/139 (58.27%), Postives = 104/139 (74.82%), Query Frame = 3
Query:   69 KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 485
            +YYGRGPIQLT   NY R G+G+G G+DL+NNPDL+AT+     ++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  116 RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDP----IISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.636e-45
Identity = 90/163 (55.21%), Postives = 114/163 (69.94%), Query Frame = 3
Query:    9 YREVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 485
            +++   ASSDYC P+  +PC    +YYGRGPIQL+ NYNY   G  +G   DLL NPDL+AT+   G    FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG+G +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  109 FKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIG--VDLLANPDLVATDATVG----FKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.636e-45
Identity = 84/159 (52.83%), Postives = 110/159 (69.18%), Query Frame = 3
Query:   21 GAASSDYC--DPNYPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 485
            G   SDYC     +PC    KYYGRGPIQ+++NYNY   G+ +G   +LL+NPDL+A++      +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG+G +  V +RIGF+  +C   G+  G NLDC NQRP+
Sbjct:  169 GNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIG--SNLLSNPDLVASD----ATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.121e-45
Identity = 87/163 (53.37%), Postives = 113/163 (69.33%), Query Frame = 3
Query:    9 YREVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 485
            +++   A++DYC P+  +PC    +YYGRGPIQL+ NYNY   G  +G   DLL NPDL+AT+      +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+G+ TNIINGG+ECG+G +  V +RIGF+  +C   G+  GDNLDC NQRP+
Sbjct:  109 FKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIG--VDLLRNPDLVATDP----TVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.061e-44
Identity = 85/164 (51.83%), Postives = 110/164 (67.07%), Query Frame = 3
Query:    9 YREVGAASSDYC--DPNYPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 488
            Y     +  DYC     +PC    KY+GRGPIQ+++NYNY   G  +G   +LLNNPDL+A +     V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D   GR+PG+G+ TNIINGG+EC  G N  + NRIGF+  +C   G+ PG+NLDC+NQRP+G
Sbjct:   89 YNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIG--VNLLNNPDLVAND----AVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.363e-44
Identity = 85/160 (53.12%), Postives = 111/160 (69.38%), Query Frame = 3
Query:   21 GAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 488
            GAA  DYC  +  +PC    KYYGRGPIQL++N+NY   G+ +G   DLL +PDL+A++      +SF +A WFWMT Q PKPSCH V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG+G +D V +RIGF+  +C   G+    NLDC +QRP+G
Sbjct:  172 GAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGA--DLLGDPDLVASD----ATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.086e-44
Identity = 79/139 (56.83%), Postives = 101/139 (72.66%), Query Frame = 3
Query:   69 KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 485
            +YYGRGPIQLT   NY R G+G+G G++L+NNPDL+AT+     ++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  116 RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDP----IISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CX295496 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.086e-44
Identity = 92/158 (58.23%), Postives = 106/158 (67.09%), Query Frame = 3
Query:   39 YCDP--NYPC-RGKYY-GRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNL 497
            YCDP  NY C  GK Y GRGPIQL+WNYNY  CG+ L     LL  P+L+ T+     V+SFK+AIWFWM  Q PKPSCH VI   W PSA D+ AGR+PGYG+ TNIINGGIECG GG N A  +RIGF+  +C   G   G NLDC  QRP+G  L
Sbjct:  182 YCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKL--PLLQEPELVETDP----VISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
The following BLAST results are available for this feature:
BLAST of CX295496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_ORYSJ3.297e-4657.42Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_VITVI7.345e-4652.63Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIA_SOLCI1.253e-4558.27Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI2_HORVU1.636e-4555.2126 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_ORYSJ1.636e-4552.83Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE8.121e-4553.37Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHID_SOLLC1.061e-4451.83Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI12_ORYSJ2.363e-4453.13Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC3.086e-4456.83Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI6_POPTR3.086e-4458.23Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]

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Properties
Property NameValue
Genbank descriptionC05072G11SK PhIFruit1 Citrus clementina cDNA clone C05072G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295496 ID=CX295496; Name=CX295496; organism=Citrus clementina; type=EST; length=670bp
GAGGGCTTTACAGGGAAGTTGGCGCTGCGTCGTCCGACTACTGTGATCCT
AACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCAC
TTGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAGGGCGAGGAGAGG
ACTTGTTGAACAATCCAGACCTTCTTGCTACTAATGATAAAGAAGGACGA
GTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACC
AAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAA
ATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATA
ATCAACGGTGGAATTGAATGTGGCTACGGTGGGAATGACGCTGTACGTAA
CCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTG
GTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTTAATCTGATG
GCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAA
TAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGACAAC
TAAACTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACTGGATCCACA
TGGATCAATGAGTCTTCTCC
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